Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27310 106 / 1e-28 CO B-box type zinc finger family protein (.1) AT5G54470 105 / 3e-28 CO B-box type zinc finger family protein (.1) AT3G21890 59 / 3e-11 CO B-box type zinc finger family protein (.1) AT3G21150 59 / 2e-10 CO EIP6, BBX32 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) AT4G15248 56 / 3e-10 CO B-box type zinc finger family protein (.1) AT5G24930 54 / 8e-09 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT3G02380 54 / 1e-08 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT1G68190 54 / 2e-08 CO B-box zinc finger family protein (.1) AT4G15250 52 / 3e-08 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT2G24790 52 / 7e-08 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033751 [exp] 227 / 5e-76 AT4G27310 114 / 9e-32 B-box type zinc finger family protein (.1) Lus10018513 [exp] 144 / 5e-43 AT4G27310 117 / 3e-32 B-box type zinc finger family protein (.1) Lus10039727 [exp] 143 / 2e-42 AT5G54470 118 / 1e-32 B-box type zinc finger family protein (.1) Lus10015097 [exp] 75 / 3e-17 AT4G15248 94 / 5e-26 B-box type zinc finger family protein (.1) Lus10031583 [exp] 74 / 8e-17 AT3G21890 96 / 1e-26 B-box type zinc finger family protein (.1) Lus10039694 [exp] 67 / 2e-14 AT4G15248 108 / 1e-31 B-box type zinc finger family protein (.1) Lus10027151 [exp] 67 / 3e-14 AT4G15248 109 / 7e-32 B-box type zinc finger family protein (.1) Lus10033380 [exp] 65 / 1e-12 AT3G21150 112 / 3e-30 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) Lus10034830 [exp] 63 / 5e-12 AT3G21150 112 / 3e-30 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G150500 [exp] 130 / 9e-38 AT4G27310 114 / 1e-31 B-box type zinc finger family protein (.1) Potri.001G414700 [exp] 111 / 8e-30 AT5G54470 126 / 2e-35 B-box type zinc finger family protein (.1) Potri.004G026900 [exp] 107 / 1e-29 AT4G27310 109 / 2e-30 B-box type zinc finger family protein (.1) Potri.011G125400 [exp] 110 / 3e-29 AT5G54470 120 / 1e-32 B-box type zinc finger family protein (.1) Potri.011G039700 [exp] 106 / 6e-29 AT4G27310 105 / 3e-28 B-box type zinc finger family protein (.1) Potri.004G027100 [exp] 95 / 2e-25 AT5G54470 97 / 4e-26 B-box type zinc finger family protein (.1) Potri.004G027000 [exp] 89 / 4e-23 AT4G27310 91 / 5e-24 B-box type zinc finger family protein (.1) Potri.007G121100 [exp] 67 / 2e-14 AT4G15248 108 / 2e-31 B-box type zinc finger family protein (.1) Potri.010G251800 [exp] 69 / 5e-14 AT3G21150 130 / 5e-37 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) Potri.017G039400 [exp] 64 / 2e-13 AT4G15248 100 / 3e-28 B-box type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [flax] [poplar] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Lus10031593 pacid=23155978 polypeptide=Lus10031593 locus=Lus10031593.g ID=Lus10031593.BGIv1.0 annot-version=v1.0 ATGAAGAATTGCGAGCTCTGCAAGTCTCCGGCGAGGACCTACTGCGAATCCGACGACGCTAGCCTCTGCTGGTCATGCGACACCAAGGTTCACGGAGCTA ATTTCCTCGTCGCTCGTCACTCCCGCACTCTGCTCTGTCAATTGTGTCAGTCCGTAACTCCCTGGCAGGCCGCCGGTGCCAAGCTCGGAAACACCGTCTC TTTCTGTCTACGCTGCGCTAATGGAGACACTAGTAATCGAGATGAAAGCGGAAGTGAGGGGGAAGAGGATGAAGATGACGAGATCGAGATCGAGATCGAG GAAGATCAGGAGGAAGAGGAAGGAGATAATCAGGTTGTTCCATGGTCGTCGTCCTCCGCCTCTCCGCCTCCGCCGGCAAGCGACAGCGAGGACTGTGAAG ATTTCGTTGAGTCTGATCGGAGGAGTCTAGATCTTAGATTCTTTCCTCAGGACGATATCACCCGCCGATCTTCTAGCTCTAGACAGTCGGCGATCAGCTG TGACGATGAAGATGATTCGTCGAGGCCGATGAAACTCCGGAGGATGGAAGCCGTCGATGAGGATGTTACGTCGAGGAAGAGTGGCCGTCCGATTTGA
AA sequence Show only first row Show all	>Lus10031593 pacid=23155978 polypeptide=Lus10031593 locus=Lus10031593.g ID=Lus10031593.BGIv1.0 annot-version=v1.0 MKNCELCKSPARTYCESDDASLCWSCDTKVHGANFLVARHSRTLLCQLCQSVTPWQAAGAKLGNTVSFCLRCANGDTSNRDESGSEGEEDEDDEIEIEIE EDQEEEEGDNQVVPWSSSSASPPPPASDSEDCEDFVESDRRSLDLRFFPQDDITRRSSSSRQSAISCDDEDDSSRPMKLRRMEAVDEDVTSRKSGRPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27310	CO		B-box type zinc finger family ...		Lus10031593 [exp]	0	1
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10024896 [exp]	2.4	0.8626
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10008007 [exp]	3.3	0.8761
AT5G50360			unknown protein		Lus10038406 [exp]	6.3	0.8179
AT3G27250			unknown protein		Lus10032077 [exp]	10.9	0.8447
AT4G15248	CO		B-box type zinc finger family ...		Lus10027151 [exp]	11.3	0.8593
AT1G26800			RING/U-box superfamily protein...		Lus10030464 [exp]	13.4	0.8227
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10006224 [exp]	13.6	0.8468
					Lus10021347 [exp]	14.5	0.8314
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003399 [exp]	15.5	0.8612
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10007976 [exp]	17.5	0.8551

Compare expression of checked genes

Lus10031593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.