Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11360 197 / 6e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) AT5G54430 179 / 7e-56 ATPHOS32 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT4G27320 169 / 1e-51 ATPHOS34 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G21210 114 / 2e-28 zinc ion binding (.1) AT3G17020 43 / 4e-05 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT2G24370 43 / 0.0002 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G03270 41 / 0.0003 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT4G31230 41 / 0.0005 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G09740 40 / 0.0005 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033749 [exp] 387 / 5e-137 AT1G11360 245 / 1e-81 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10039730 [exp] 255 / 8e-85 AT1G11360 288 / 3e-98 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10037867 [exp] 166 / 1e-48 AT1G11360 244 / 1e-78 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10038561 [exp] 154 / 5e-46 AT1G11360 224 / 7e-74 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10018515 [exp] 84 / 3e-20 AT1G11360 127 / 9e-38 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10016900 [exp] 59 / 1e-09 AT3G17020 229 / 1e-72 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10037761 [exp] 54 / 1e-08 AT3G17020 224 / 4e-76 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10022602 [exp] 50 / 2e-07 AT3G53990 225 / 2e-76 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10017207 [exp] 48 / 8e-07 AT3G53990 217 / 2e-73 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G039800 [exp] 211 / 4e-68 AT1G11360 269 / 3e-91 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.013G150200 [exp] 207 / 1e-66 AT1G11360 209 / 1e-67 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.019G119400 [exp] 208 / 2e-66 AT1G11360 164 / 2e-49 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.011G125500 [exp] 187 / 2e-58 AT5G54430 237 / 3e-78 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.001G409100 [exp] 181 / 9e-57 AT5G54430 226 / 2e-74 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.006G092700 [exp] 53 / 2e-08 AT3G53990 207 / 1e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.013G009800 [exp] 52 / 5e-08 AT3G62550 172 / 2e-55 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.005G015200 [exp] 51 / 8e-08 AT3G62550 156 / 4e-49 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.014G122000 [exp] 47 / 3e-06 AT3G62550 195 / 1e-64 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.002G196700 [exp] 41 / 0.0002 AT3G62550 196 / 6e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10031594 pacid=23155869 polypeptide=Lus10031594 locus=Lus10031594.g ID=Lus10031594.BGIv1.0 annot-version=v1.0 ATGACCTCCCCACAGCAAAAGCATCCGGAATCCGACCTCCCAATCCCACCGTCCCTCACTTCCCTCCGAACCCGCTCCGCCCCCTCCCCGCGCAGAATCA GCTTCTCCTCCTCCACTCCCACCGCCGCCGCCGACACCCCTACCTCCGCCGCCCAACGCCGCATTGCGATCGCCGTCGATCTCAGCGACGAGAGCGCCCA CGCCGTCAATTGGGCCGTCCAGAACTATCTTCGCCCTGGTGATGCCGTCATCCTCCTCCACGTCCGACCCACCTCCGTACTCTACGGCGCCGATTGGGGA TCCATCAAAATCCAAATCAACAACGGCCGGAATAGCGAGCAAGGAGGCGAAGCCGCCGCCGCTGATCTCGCGGACAGGCTGGAGCAGCAGCAGCTTGAGG ATGACTATGATAGCTTCACCACGACAAAGGCGAACGCGGTGGCGCAGCCATTGGTGGACGGAGGGATACCGTTCAAGATTCGGATAGTGAAGGACCACGA CATGAAGGAGAGGCTATGTCTGGAAGTGGAGAGGCTAGGACTGAGCGCGGTGGTGATGGGGAGCCGAGGATTCGGTGCAACGAGGAGGAGGAACGGTAAA GAGAGGTTGGGGAGCGTGAGCGATTACTGCGTTCATCACTGCATTTGTCCGGTGGTGGTGGTGAGGTATCCTGAGGAGGAACAGGATGATGAAGATGGAA GTTTGAAGGCTGGAGTCATTACTGCTGTTCCAGAGGAGCAGGAAGAGCTTCATGATGGCTCTGATGAACATAAAGATGCTTAA
AA sequence Show only first row Show all	>Lus10031594 pacid=23155869 polypeptide=Lus10031594 locus=Lus10031594.g ID=Lus10031594.BGIv1.0 annot-version=v1.0 MTSPQQKHPESDLPIPPSLTSLRTRSAPSPRRISFSSSTPTAAADTPTSAAQRRIAIAVDLSDESAHAVNWAVQNYLRPGDAVILLHVRPTSVLYGADWG SIKIQINNGRNSEQGGEAAAADLADRLEQQQLEDDYDSFTTTKANAVAQPLVDGGIPFKIRIVKDHDMKERLCLEVERLGLSAVVMGSRGFGATRRRNGK ERLGSVSDYCVHHCICPVVVVRYPEEEQDDEDGSLKAGVITAVPEEQEELHDGSDEHKDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11360			Adenine nucleotide alpha hydro...		Lus10031594 [exp]	0	1
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10018355 [exp]	1.4	0.8966
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	3.5	0.8512
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10007654 [exp]	3.5	0.8760
					Lus10017454 [exp]	4.6	0.8380
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Lus10001835 [exp]	5.7	0.8278
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10013298 [exp]	6.5	0.8636
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Lus10006551 [exp]	7.4	0.8451
AT3G24100			Uncharacterised protein family...		Lus10007122 [exp]	8.0	0.7812
AT5G01750			Protein of unknown function (D...		Lus10001255 [exp]	8.9	0.8349
AT5G58375			Methyltransferase-related prot...		Lus10042227 [exp]	12.2	0.8428

Compare expression of checked genes

Lus10031594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.