Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031639 [exp] 363 / 1e-125 AT3G55210 48 / 8e-06 NAC domain containing protein 63 (.1) Lus10033699 [exp] 331 / 5e-113 AT3G04060 49 / 6e-06 NAC domain containing protein 46 (.1) Lus10009858 [exp] 184 / 2e-56 AT5G62380 53 / 1e-07 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10010294 [exp] 173 / 4e-52 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10025078 [exp] 96 / 9e-23 AT1G79580 69 / 1e-12 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10024006 [exp] 95 / 2e-22 AT1G79580 75 / 3e-14 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10033676 [exp] 79 / 5e-17 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10008200 [exp] 69 / 4e-14 ND 43 / 6e-05 Lus10008240 [exp] 70 / 8e-14 AT1G33060 50 / 1e-06 NAC 014 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G028700 [exp] 77 / 1e-16 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G028300 [exp] 75 / 1e-15 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G029200 [exp] 67 / 2e-13 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.006G028900 [exp] 61 / 7e-11 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.019G063000 [exp] 55 / 3e-09 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.016G027900 [exp] 54 / 2e-08 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.015G002900 [exp] 53 / 4e-08 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.014G163600 [exp] 46 / 9e-06 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10031595 pacid=23155812 polypeptide=Lus10031595 locus=Lus10031595.g ID=Lus10031595.BGIv1.0 annot-version=v1.0 ATGACTCCCGAGCAGTGCTACCCGGTCCAAGAATCAGATCTGTACGGCGACAAGGAGCCATGGGAGCTGTGGAGAGATCACCAAATCAGGTCCCACCGGG AGCCGGAAGAAGCCATTTACCTCTTCACCAAGCTGAAGAAGAAGTCGAAGAACGCCAAGAACTTCGAGCGGAGGATCGGGAATTGCGGCGGGAACTGGCA CGGCGAGGATTCGGGGAACGTGTTCGTGAAATTCAGAGGCGGAGACGGATCGATGTGGGCTGGGAAGAAGAGGAAGTTCAAGTACGAGAATAAGAAATCG GAGGCGGAGCATGGGAAGTGGCTGCTCAGCGAGTTTAGAGTCGAGAATGTAGAGAGTGAGAGTTCGTTCGAGACGGCGATTTGTATGATGAAGATCAACG GGTCTCCGTTCGCCGAGAAGGAATTGGGTAAGATGATGCCCAGGAAGAGGAAGCTTGACGATATATTGGATGATTTTCTTCATCGGGGATTGGAATTCCC TGGCCCTGCTCTTAAGAAGTTACAACTTGATCGGAAGCAGAGCAATTCGGTTGGTGCTGCCGTTCCGATCGTCATTCAGAACGAAACGGCTGCGTTTCAG GCCTCTGGTGATGGATACGACTCCGTTTCAGAATGA
AA sequence Show only first row Show all	>Lus10031595 pacid=23155812 polypeptide=Lus10031595 locus=Lus10031595.g ID=Lus10031595.BGIv1.0 annot-version=v1.0 MTPEQCYPVQESDLYGDKEPWELWRDHQIRSHREPEEAIYLFTKLKKKSKNAKNFERRIGNCGGNWHGEDSGNVFVKFRGGDGSMWAGKKRKFKYENKKS EAEHGKWLLSEFRVENVESESSFETAICMMKINGSPFAEKELGKMMPRKRKLDDILDDFLHRGLEFPGPALKKLQLDRKQSNSVGAAVPIVIQNETAAFQ ASGDGYDSVSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031595 [exp]	0	1
AT3G58860			F-box/RNI-like superfamily pro...		Lus10003216 [exp]	4.9	0.7486
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034036 [exp]	5.1	0.8667
AT4G08850			Leucine-rich repeat receptor-l...		Lus10004046 [exp]	6.6	0.8449
AT2G35615			Eukaryotic aspartyl protease f...		Lus10035668 [exp]	8.1	0.7621
					Lus10019810 [exp]	13.1	0.7995
AT1G76810			eukaryotic translation initiat...		Lus10023474 [exp]	17.7	0.7870
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	18.5	0.7845
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	21.7	0.7821
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	22.7	0.7821
AT5G62750			unknown protein		Lus10004267 [exp]	22.9	0.8209

Compare expression of checked genes

Lus10031595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.