Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19130 653 / 0 S-locus lectin protein kinase family protein (.1) AT4G00340 383 / 9e-122 RLK4 receptor-like protein kinase 4 (.1) AT4G21380 351 / 2e-109 ARK3 receptor kinase 3 (.1) AT4G11900 351 / 3e-109 S-locus lectin protein kinase family protein (.1) AT4G27290 332 / 6e-103 S-locus lectin protein kinase family protein (.1) AT1G65790 327 / 3e-100 ARK1 receptor kinase 1 (.1) AT4G21390 326 / 5e-100 B120 S-locus lectin protein kinase family protein (.1) AT1G61360 323 / 3e-99 S-locus lectin protein kinase family protein (.1.2) AT1G61610 323 / 5e-99 S-locus lectin protein kinase family protein (.1) AT1G65800 322 / 1e-98 ARK2 receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042266 [exp] 726 / 0 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033748 [exp] 693 / 0 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 550 / 0 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039732 [exp] 529 / 1e-178 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 497 / 1e-165 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039762 [exp] 492 / 5e-164 AT2G19130 621 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039733 [exp] 488 / 3e-162 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039731 [exp] 456 / 1e-142 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018516 [exp] 452 / 8e-142 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119200 [exp] 786 / 0 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 768 / 0 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G121000 [exp] 763 / 0 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014900 [exp] 449 / 2e-146 AT4G21390 660 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.014G086900 [exp] 435 / 2e-141 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.005G014700 [exp] 434 / 5e-141 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G134900 [exp] 422 / 9e-137 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 368 / 6e-116 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 366 / 2e-115 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 358 / 2e-112 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10031596 pacid=23155984 polypeptide=Lus10031596 locus=Lus10031596.g ID=Lus10031596.BGIv1.0 annot-version=v1.0 ATGGAGAATCTACGGACCTTACTCTCCTTCTTCTTTCTCACCTTCTTCCTACTAACCCACCTCTCCACCGCCGCCGACAGGATCACACCCGACAGTCCCC TTTCCGGCGACCAAACCATCTCCTCCGCCGGTGACGCCTTCGTCCTCGGCTTCTTCCGTCCATCAGACAATTCCACCAGGTACTACATTGGAATCTGGTA CAACCAAACCGTCGTCTCCACCCAAACCGTGGTCTGGGTTGCAAACAGGGGATCCCCTGTTTCCGACCGGTTCTCGTCGGAGCTCCGTATCTCCGGCGGT AACCTCGTCCTCGTCAATGAATCCGGAGTCCCAATTTGGTCAACGGGGTTAAACAGAAGCAGCTCCTCCTCAACAGTCGATGCTGTCCTTCTTGACCAGG GGAATCTCGTTCTGCTCCCGAATGGGTCGTACCCGAATCCGAATTTGAACTCATCGTCGGACTCGTTCCGGCCGAAGTGGCAGAGCTTCGACAACCCGGG GGACACGTGGCTGCCGGGAGGCAAAATCGGGCTGAAAAAGGTGGACAAAACGTCGACTTTTCTCACGTCGTGGAAGAACACCGAAGACCCCACACCCGGC CCTTTTACGCTGGAGCTCGACCCGAACGGAAGCAGCCAGTACTTCATCTTCTGGAACAAGACGGAGAATTACTGGACGAGCGGGGCGTGGGATTCTCAGG CGAGGATCTTCAGGTTGGTCCCCGAGATGAGATTGAATTTCATCTACAACTTCTCCTACATCGACAACGCGAACGAGAGCTACTTCACTTACTCGATGTA CAACGCGACTCTAATTTCCCGATTCGTGATGTCCGTCGGCGGCCAGATCCAACAGCTTTCATGGTTGGAGTCTTCAAGCCAATGGAACCTCTTCTGGTCG CAGCCGAGGGTCCAGTGCGAGGTTTACGGCTACTGCGGCGGATTTGGAAGCTGTACGGAGAGGAGCCAGCCGTTCTGCAGCTGTTTGCCCGGGTTCGTAC CGAAATCGGCGGAGGATTATCAGTCGAACGTCTTCTACGGCGGATGCGTCAGGAGGACGAGTCTCCAGTGCAAGAACAACAATTCGAGCGTAGGTTCGGG TGAGAATCGAGATGGGTTTTCGCCGAATTTGGACATGCAGTTGCCGAAGAATCCGGTGACGGTGGGGGCCGGCGGTGGGAGCCTGGAGGATTGCGAGGCG GTTTGTTTGAGGAACTGTTCGTGCTCTGCTTACGCTTATGAAGGGGATAATCAGTGTTCTGTTTGGTATGGGGAGCTTCTGAATTTGAAAGACGGTGGTG GGAAGACTATTTATGTGAAGCTTGCAGCTTCTGAGATTCCTAATGGGAAGGATAGTAAGAGCAATGCAGTTGTGATCGGTGCTGTAGCGGGATCGATTGG ATTCGTCGCCATTCTCGGGCTAATCATGTTCATTGTGTTGAGGAGGAGGAGTAGACTGGCGAAGCCTGGGAAAGCAGTGGAAGGGTCGTTAATGGCGTTT ACTTACAGGGATATGCAGAATGCGACGAGGAATTTCTCCGAGAAGCTCGGAGGAGGAGGGTTCGGCAACGTTTTCAAAGGCGTCCTGGCAGATTCGACGG CCATAGCAGTGAAGAAGCTGGAGAGCATTAGTCAAGGGGAGAAGCAGTTTAGGACTGAAGTGAGCACGATCGGCACGATCCAGCATGTTAATCTGGTTCG ACTTCGAGGATTCTGTTCCGAAGGTGCGACGAAGAGGCTGTTGGTTTACGATTACATGCCGAACAGTTCCCTCGATCATCATCTGTTTAAGAAGGGCGGC GAGCAGGTTCTGGACTGGCGGACTAGGTACAATATAGCTCTTGGGACGGCTAGAGGGCTGACTTATCTCCACGAGAAATGCCGGGATTGCATCATACATT GCGACATCAAGCCGGAGAACATCCTTCTGGACTCCGAAATGTGTCCGAAAGTCGCGGATTTCGGGCTGGCCAAGCTCGTGGGGCGCGATTTCAGCAGGGT GCTGACGACCATGCGAGGGACTCGAGGGTACCTCGCACCGGAGTGGATTTCGGGAGTGGCGAATAACGCTAAGGTTCGGGAGTGGCGATTACCGCTAAGG CCGATGTTTACAGTTATGGAATGA
AA sequence Show only first row Show all	>Lus10031596 pacid=23155984 polypeptide=Lus10031596 locus=Lus10031596.g ID=Lus10031596.BGIv1.0 annot-version=v1.0 MENLRTLLSFFFLTFFLLTHLSTAADRITPDSPLSGDQTISSAGDAFVLGFFRPSDNSTRYYIGIWYNQTVVSTQTVVWVANRGSPVSDRFSSELRISGG NLVLVNESGVPIWSTGLNRSSSSSTVDAVLLDQGNLVLLPNGSYPNPNLNSSSDSFRPKWQSFDNPGDTWLPGGKIGLKKVDKTSTFLTSWKNTEDPTPG PFTLELDPNGSSQYFIFWNKTENYWTSGAWDSQARIFRLVPEMRLNFIYNFSYIDNANESYFTYSMYNATLISRFVMSVGGQIQQLSWLESSSQWNLFWS QPRVQCEVYGYCGGFGSCTERSQPFCSCLPGFVPKSAEDYQSNVFYGGCVRRTSLQCKNNNSSVGSGENRDGFSPNLDMQLPKNPVTVGAGGGSLEDCEA VCLRNCSCSAYAYEGDNQCSVWYGELLNLKDGGGKTIYVKLAASEIPNGKDSKSNAVVIGAVAGSIGFVAILGLIMFIVLRRRSRLAKPGKAVEGSLMAF TYRDMQNATRNFSEKLGGGGFGNVFKGVLADSTAIAVKKLESISQGEKQFRTEVSTIGTIQHVNLVRLRGFCSEGATKRLLVYDYMPNSSLDHHLFKKGG EQVLDWRTRYNIALGTARGLTYLHEKCRDCIIHCDIKPENILLDSEMCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVANNAKVREWRLPLR PMFTVME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19130			S-locus lectin protein kinase ...		Lus10031596 [exp]	0	1
AT1G71090			Auxin efflux carrier family pr...		Lus10002280 [exp]	21.0	0.5835
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024905 [exp]	39.1	0.5727

Compare expression of checked genes

Lus10031596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.