Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19130 144 / 1e-40 S-locus lectin protein kinase family protein (.1) AT5G24080 90 / 9e-22 Protein kinase superfamily protein (.1) AT1G34300 76 / 9e-17 lectin protein kinase family protein (.1) AT4G00340 72 / 2e-15 RLK4 receptor-like protein kinase 4 (.1) AT2G41890 68 / 6e-14 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) AT4G32300 65 / 4e-13 SD2-5 S-domain-2 5 (.1) AT5G01020 59 / 6e-11 Protein kinase superfamily protein (.1) AT4G02010 59 / 1e-10 Protein kinase superfamily protein (.1) AT1G29720 57 / 5e-10 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 56 / 9e-10 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033748 [exp] 221 / 1e-68 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018537 [exp] 109 / 9e-32 AT2G19130 113 / 4e-30 S-locus lectin protein kinase family protein (.1) Lus10039732 [exp] 114 / 3e-30 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10042266 [exp] 114 / 5e-30 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039762 [exp] 113 / 6e-30 AT2G19130 621 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 107 / 9e-28 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10026391 [exp] 81 / 9e-21 AT2G19130 89 / 4e-22 S-locus lectin protein kinase family protein (.1) Lus10013659 [exp] 78 / 3e-18 AT5G20050 244 / 8e-79 Protein kinase superfamily protein (.1) Lus10039315 [exp] 78 / 2e-17 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119200 [exp] 147 / 1e-41 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G121000 [exp] 143 / 2e-40 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 140 / 3e-39 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.015G026300 [exp] 89 / 3e-21 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.019G086400 [exp] 79 / 7e-18 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 78 / 1e-17 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.014G086900 [exp] 78 / 1e-17 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.013G115800 [exp] 78 / 2e-17 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 77 / 3e-17 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.013G115700 [exp] 77 / 5e-17 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031597 pacid=23155985 polypeptide=Lus10031597 locus=Lus10031596.g ID=Lus10031597.BGIv1.0 annot-version=v1.0 ATGCTGTTCGAGTTCGTGTCGGGAAGGAGGAACACCGACCAAACGGAAGATGGCAAGTTCCGATTCTTCCCGAGCTGGGCTGCTAGTGTAATATCCGGGG GAGGCGATATTCTCGACTTGCTCGATCCGAGGCTGGAAGGGAATACTGACCGGGAAGAGCTTTCGCGAGTCTGTAATCTCGCTTTCTGGTGCATACAAGA CAACGAGATGCAGAGGCCTTCGATGGGGCAGGCGGTTCAGGTCCTCGAGGGGATCTTGAACGTCGACCTGCCGCCTTTCCCCAGATCTCTCAAAGTGTTT GAGGACAATCCGGAGAATGTCGTCTTCTTCAAGAACGAATCGTCCACTACCCAGAGCTCGCAAACACGAAGCAATCCTTCTGCTGCTTCGTCTCAGACAA AGAACAGCACATCATCGAGTTCCTAA
AA sequence Show only first row Show all	>Lus10031597 pacid=23155985 polypeptide=Lus10031597 locus=Lus10031596.g ID=Lus10031597.BGIv1.0 annot-version=v1.0 MLFEFVSGRRNTDQTEDGKFRFFPSWAASVISGGGDILDLLDPRLEGNTDREELSRVCNLAFWCIQDNEMQRPSMGQAVQVLEGILNVDLPPFPRSLKVF EDNPENVVFFKNESSTTQSSQTRSNPSAASSQTKNSTSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19130			S-locus lectin protein kinase ...		Lus10031597 [exp]	0	1
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10024414 [exp]	7.3	0.8127
					Lus10018015 [exp]	8.7	0.8121
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10028361 [exp]	29.7	0.7721
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	37.5	0.7712
AT5G55340			MBOAT (membrane bound O-acyl t...		Lus10022293 [exp]	38.3	0.7580
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10004984 [exp]	47.7	0.7368
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10008422 [exp]	54.0	0.7654
AT1G76140			Prolyl oligopeptidase family p...		Lus10021235 [exp]	54.5	0.7496
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025325 [exp]	60.2	0.7560
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10023527 [exp]	65.6	0.7309

Compare expression of checked genes

Lus10031597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.