Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01260 63 / 3e-10 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT1G15030 62 / 4e-10 Protein of unknown function (DUF789) (.1) AT1G03610 57 / 1e-08 Protein of unknown function (DUF789) (.1) AT4G16100 57 / 2e-08 Protein of unknown function (DUF789) (.1) AT5G49220 56 / 5e-08 Protein of unknown function (DUF789) (.1) AT1G73210 56 / 5e-08 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT5G23380 52 / 7e-07 Protein of unknown function (DUF789) (.1) AT1G17830 51 / 9e-07 Protein of unknown function (DUF789) (.1) AT4G03420 49 / 4e-06 Protein of unknown function (DUF789) (.1) AT4G28150 44 / 0.0002 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033747 [exp] 1130 / 0 AT1G15030 80 / 5e-16 Protein of unknown function (DUF789) (.1) Lus10017987 [exp] 173 / 3e-46 AT2G01260 77 / 1e-14 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Lus10041982 [exp] 173 / 5e-46 AT2G01260 79 / 2e-15 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Lus10018572 [exp] 57 / 2e-08 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10037716 [exp] 57 / 2e-08 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10016841 [exp] 57 / 3e-08 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1) Lus10033707 [exp] 56 / 4e-08 AT4G03420 359 / 2e-124 Protein of unknown function (DUF789) (.1) Lus10016842 [exp] 53 / 4e-07 AT4G16100 272 / 8e-89 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 53 / 7e-07 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G149400 [exp] 221 / 9e-63 AT1G15030 82 / 2e-16 Protein of unknown function (DUF789) (.1) Potri.017G152601 [exp] 213 / 5e-59 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1) Potri.019G119100 [exp] 186 / 2e-53 AT2G01260 84 / 1e-17 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.004G068700 [exp] 189 / 6e-51 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Potri.013G144000 [exp] 60 / 1e-09 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 59 / 5e-09 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.008G124000 [exp] 59 / 6e-09 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.010G120700 [exp] 56 / 4e-08 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.010G000700 [exp] 54 / 3e-07 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.017G151740 [exp] 52 / 3e-07 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [flax] [poplar] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Lus10031598 pacid=23155980 polypeptide=Lus10031598 locus=Lus10031598.g ID=Lus10031598.BGIv1.0 annot-version=v1.0 ATGGAGAAAGTCTCGACTACTGGACCATTGTCTGAAATCAAGCAGCCGAAAGCCGGCAAGGGTAAGAATCGGAAGTCTTACAGGAGGGCCATGGTTGCTG TTTCAGATTCCAGTAATCATCACAATGGATATGGAGATTCCTGTGTAGGGAAAGGGCAGGAGAATTGCTTGAAGAATCAGTGGAGTAGTGTCAGATCATA CTGCCGTCAAATGAAGGAAGGTGGTCACCGGGACAAGAAAATATCAGTTGGGAAGGACCATTATGGTTCAGACAGAGTTGAAGTCGATTACTGGAAAGCA AATGATCCTGGAAGCCCTACACTGAATTGGCATTTCTCATTGGAGAGCTCTTCTGCAAATTTCTGTAGCCAGCCTGCTCCGTCTCATGGCTTCCAGTACT TGAATACAGATGAACATAAGGGAGTAGTACCGAGATTGAGTGTACCGTATCGTGGTGGAGGGATGAATCGGGCTGCCCATTCTGCAACATACAAGTCATT CCATGCTTCTATGTACAGTAGATCAAGCATGGTGTTCAATCATCATTGTCGAGCAAACCCAGTAAAGTGGGTTCCGGTTGCTGCAGCCAAAGCATCTGAG ATACTGCCGAAATTTCATCGAGGTACAAACTTTACTTCTCATTCTAATGAGAAAAGCCCTTCTAGGACTGCTAAAACAAATACGAAAGCAAAAGTTGACA CTGTGTGTAAGAAACCTGCAGTAGTAGAAAGTGAACCTTTAAAACCATGTGAGAATGATGTCAGAAGGGATGAACCTAAATCCGAGAGTCCGAAGAAAGG CGGAGTAGCTTACGCTGAAAGCCAAAAGGAAACTGATGAATTCGTTGGATCGCGAGCTGTGATAGAGTATCTAACAGCAGCTTACAAACAGCAACTTTTG TCCGAGATCATCCAGTTCACTGTGGGATATCCACTTGCAGACTTTGAAACATTTATCAAGTCTTCGTCGCCAGTTATGACGTCGTCTGTTAGCTCTGTAT GTGAACGCGAGATGCAAAATGTATCGCTTTCTGGTCTCTGGAACTGGTACGAGAAGCCAGGAAGTTTTGGGTTAAAAGTCAGGATAGAACCTTGTCAAGA TCTGAATGGCTTCTTCGATGAGAAAGCACTGTTCGATGCACATTTCGTTCCTTCTCTTTCGGCTGTTCAGTTGTTTGGCTACCCAGTTCACCTAAATTCA GAGGCTAAGAGTCAAGAATCTACTTCACCAAAGCCAGCTGCAAAATCTGACACATGTGGCCAGAAAGTTCTATTTTCTAATGTTTTCCAATGCACTAACC ATGGTAAGGTTAAATTGATTTCTTCATCACCCTGCTCAAGCAATCCAGAACTTCTTTTCGAGTTCTTTGAATCGGAGCAGCCATATAATCGAAAGCCTCT TCACCTGAAGTTCTCTGTGGCCTGGTATCCAATATACCGAATACCAGAGGGGAAATTGCGTTCGTCATTTCTGACATACCATTCGCTGGGCCATTACGTA ACGAAAGGAGGCTTTCCTGCTTACTCTTCCAGTAACATGACTTCCCATACTCTCTTCCCTGCAGTAGGATTACAAAGCCTTAACACACAGGGGGAATGCT GGTTTGATCTGAAAAGACGATTCGAGAACTCTCCGAAACAATCAGTTGTTGGAGATTCTGAAATTCTCAAGAGAAGACTCCAAACCCTTGAGGGGAATGC ATCACTTCTTGCTAGAGGCTGTGTAACCAAAGGTAACATCAAGGTGACCAATAGGCAGTCAGATTACGAGTTCTTCGTTTCTCGGAAGCGCTGA
AA sequence Show only first row Show all	>Lus10031598 pacid=23155980 polypeptide=Lus10031598 locus=Lus10031598.g ID=Lus10031598.BGIv1.0 annot-version=v1.0 MEKVSTTGPLSEIKQPKAGKGKNRKSYRRAMVAVSDSSNHHNGYGDSCVGKGQENCLKNQWSSVRSYCRQMKEGGHRDKKISVGKDHYGSDRVEVDYWKA NDPGSPTLNWHFSLESSSANFCSQPAPSHGFQYLNTDEHKGVVPRLSVPYRGGGMNRAAHSATYKSFHASMYSRSSMVFNHHCRANPVKWVPVAAAKASE ILPKFHRGTNFTSHSNEKSPSRTAKTNTKAKVDTVCKKPAVVESEPLKPCENDVRRDEPKSESPKKGGVAYAESQKETDEFVGSRAVIEYLTAAYKQQLL SEIIQFTVGYPLADFETFIKSSSPVMTSSVSSVCEREMQNVSLSGLWNWYEKPGSFGLKVRIEPCQDLNGFFDEKALFDAHFVPSLSAVQLFGYPVHLNS EAKSQESTSPKPAAKSDTCGQKVLFSNVFQCTNHGKVKLISSSPCSSNPELLFEFFESEQPYNRKPLHLKFSVAWYPIYRIPEGKLRSSFLTYHSLGHYV TKGGFPAYSSSNMTSHTLFPAVGLQSLNTQGECWFDLKRRFENSPKQSVVGDSEILKRRLQTLEGNASLLARGCVTKGNIKVTNRQSDYEFFVSRKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15030			Protein of unknown function (D...		Lus10031598 [exp]	0	1
AT1G50575			Putative lysine decarboxylase ...		Lus10003762 [exp]	6.5	0.8975
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	8.1	0.9024
AT5G48340			unknown protein		Lus10041085 [exp]	11.7	0.9013
AT5G37290			ARM repeat superfamily protein...		Lus10008435 [exp]	14.5	0.8918
AT3G03560			unknown protein		Lus10020297 [exp]	14.8	0.8761
AT5G46550			DNA-binding bromodomain-contai...		Lus10011989 [exp]	15.8	0.8852
					Lus10037282 [exp]	18.7	0.8563
					Lus10022017 [exp]	19.6	0.8927
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026913 [exp]	20.0	0.8973
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	23.8	0.8859

Compare expression of checked genes

Lus10031598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.