Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03010 450 / 3e-158 RNI-like superfamily protein (.1) AT1G03440 447 / 4e-157 Leucine-rich repeat (LRR) family protein (.1) AT3G17640 229 / 9e-72 Leucine-rich repeat (LRR) family protein (.1) AT3G59510 159 / 1e-44 Leucine-rich repeat (LRR) family protein (.1) AT2G15320 131 / 1e-34 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 127 / 1e-32 Leucine-rich repeat (LRR) family protein (.1) AT5G66330 125 / 3e-32 Leucine-rich repeat (LRR) family protein (.1) AT5G62230 127 / 1e-31 ERL1 ERECTA-like 1 (.1.2) AT5G25930 126 / 2e-31 Protein kinase family protein with leucine-rich repeat domain (.1) AT2G26330 121 / 7e-30 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029622 [exp] 509 / 0 AT1G03440 534 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10008190 [exp] 485 / 7e-172 AT1G03440 576 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10042681 [exp] 206 / 3e-64 AT4G03010 205 / 1e-63 RNI-like superfamily protein (.1) Lus10027967 [exp] 204 / 6e-64 AT1G03440 268 / 3e-92 Leucine-rich repeat (LRR) family protein (.1) Lus10027968 [exp] 151 / 2e-45 AT1G03440 160 / 2e-49 Leucine-rich repeat (LRR) family protein (.1) Lus10025578 [exp] 138 / 7e-37 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10036251 [exp] 129 / 2e-32 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038392 [exp] 126 / 2e-31 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10011576 [exp] 122 / 4e-30 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136100 [exp] 462 / 6e-163 AT1G03440 541 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.011G023500 [exp] 262 / 3e-84 AT3G17640 350 / 2e-118 Leucine-rich repeat (LRR) family protein (.1) Potri.004G001000 [exp] 249 / 2e-79 AT3G17640 386 / 1e-132 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028600 [exp] 144 / 2e-39 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028400 [exp] 142 / 4e-38 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117800 [exp] 124 / 1e-31 AT5G66330 506 / 2e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.019G129300 [exp] 124 / 7e-31 AT4G08850 687 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G139000 [exp] 122 / 5e-30 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G235800 [exp] 121 / 7e-30 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.005G188700 [exp] 121 / 9e-30 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031601 pacid=23156002 polypeptide=Lus10031601 locus=Lus10031601.g ID=Lus10031601.BGIv1.0 annot-version=v1.0 ATGCCCGGATCAAACTTCTTCTCCACCTGGGACTTCACCGGCGACCCCTGCAACTTCACCGGCGTTTCCTGCCAGTCCGACCGGGTCGTCTCTCTAAATC TGGGCGACCCGAGTGCCGGCTCTCGAGGTCTGATCGGCAAGCTCGACCCGATCATCGGCAACCTCACTGCTCTAACCGAGCTCATTATAGTTCCGGGTCA TGTCAGGGGCTCGTTACCCGACTCCATTTCGCAACTCACGGAGCTCAAATTCCTAGCAATCAACCGGAATTACCTCACCGGCGCCATTCCTGATTCCATC TTCCGGCTTGTTAGTCTCGAAACCCTCGATCTCGGGTACAACCAGCTCACAGGAACTGTCCCGCCTTTGATCGGGTCTATTCCGGGTCTATCCAACCTCA TCCTGAAACATAACCGGCTGTCAGGTTCGGTTCCTGAATTCGGGTCTCGGAGCACCCTGAACCGAGTCGATTTGTCTCACAACCAGCTCAACGGCTCTAT TCTTCCGTCTTCAATTCCTTCCTCCCTTCGGTACCTCTCTGTTTCCTGGAACCGGCTAGCCGGGCCGGTGGATAGCTTCCTGGCCGGACTGGATCGGCTC AACTATGTAGACCTGAGTTCGAACCGGTTCTCCGGTTCAATCCCGGCTCGAATCTTTACATTCCCGATCACCAACCTCCAATTGAATCGGAACTTGTTCA CTGGTCGAGTTCAACCCGTCAGAGAGGTGTCGATCCCGACAGTCGATCTCAGCTACAACCGATTTTACGGTCCTGTGTCGCCAATGTTTACTACGGTGCG GAATCTTTATCTGAATAGTAACCGTTTCAGCGGTGAGGTTCCGAGTAGCTTGGTGGACCAGTTACTGGCGGGGAAAATTGAGACTCTCTATTTGCAGCAT AATTTCTTGACGGGGATCGAGATCGATCCGGCTGAAAAGATTCCGACGACCTCCTCACTGTGCTTGCAGTACAATTGCATGGTGCCGCCGGTCGACGCTC CTTGCCCTCTAAAGGCTGGGAGGGCGAAGGCGAGACCGATTGATCAGTGCAGGCGTTCGTACCCTCCGGTGTTAAGTGAGCGCTCTACAGTCGGAGATAC ATTTCGATATATGATTTCTGACTAA
AA sequence Show only first row Show all	>Lus10031601 pacid=23156002 polypeptide=Lus10031601 locus=Lus10031601.g ID=Lus10031601.BGIv1.0 annot-version=v1.0 MPGSNFFSTWDFTGDPCNFTGVSCQSDRVVSLNLGDPSAGSRGLIGKLDPIIGNLTALTELIIVPGHVRGSLPDSISQLTELKFLAINRNYLTGAIPDSI FRLVSLETLDLGYNQLTGTVPPLIGSIPGLSNLILKHNRLSGSVPEFGSRSTLNRVDLSHNQLNGSILPSSIPSSLRYLSVSWNRLAGPVDSFLAGLDRL NYVDLSSNRFSGSIPARIFTFPITNLQLNRNLFTGRVQPVREVSIPTVDLSYNRFYGPVSPMFTTVRNLYLNSNRFSGEVPSSLVDQLLAGKIETLYLQH NFLTGIEIDPAEKIPTTSSLCLQYNCMVPPVDAPCPLKAGRAKARPIDQCRRSYPPVLSERSTVGDTFRYMISD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10031601 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10007077 [exp]	1.0	0.9718
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036704 [exp]	1.4	0.9683
AT5G62360			Plant invertase/pectin methyle...		Lus10024596 [exp]	3.0	0.9121
					Lus10012088 [exp]	3.2	0.8699
AT1G78160		APUM7	pumilio 7 (.1)		Lus10041139 [exp]	5.3	0.8485
AT1G71760			unknown protein		Lus10004010 [exp]	5.7	0.8788
AT4G15790			unknown protein		Lus10004794 [exp]	12.4	0.8396
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10038321 [exp]	12.6	0.7787
AT2G31050			Cupredoxin superfamily protein...		Lus10039842 [exp]	19.0	0.8479
AT3G10320			Glycosyltransferase family 61 ...		Lus10042043 [exp]	20.8	0.7974

Compare expression of checked genes

Lus10031601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.