Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03230 335 / 8e-107 S-locus lectin protein kinase family protein (.1) AT1G11330 331 / 2e-106 S-locus lectin protein kinase family protein (.1.2) AT4G23180 324 / 2e-105 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G21390 322 / 4e-103 B120 S-locus lectin protein kinase family protein (.1) AT3G16030 321 / 8e-103 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT1G65790 321 / 1e-102 ARK1 receptor kinase 1 (.1) AT1G65800 316 / 8e-101 ARK2 receptor kinase 2 (.1) AT4G27300 315 / 1e-100 S-locus lectin protein kinase family protein (.1) AT4G21380 314 / 4e-100 ARK3 receptor kinase 3 (.1) AT4G23260 307 / 2e-99 CRK18 cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031603 [exp] 582 / 0 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033741 [exp] 581 / 0 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10033743 [exp] 561 / 0 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10025891 [exp] 545 / 0 AT4G21380 593 / 0.0 receptor kinase 3 (.1) Lus10028782 [exp] 481 / 9e-165 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039767 [exp] 479 / 9e-164 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039733 [exp] 471 / 8e-161 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018516 [exp] 465 / 9e-152 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039731 [exp] 463 / 2e-150 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G150900 [exp] 385 / 2e-127 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120300 [exp] 375 / 5e-124 AT4G21380 630 / 0.0 receptor kinase 3 (.1) Potri.011G125601 [exp] 341 / 1e-110 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035850 [exp] 325 / 2e-109 AT4G23270 397 / 6e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) Potri.011G027501 [exp] 330 / 2e-108 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G125000 [exp] 335 / 4e-108 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027400 [exp] 335 / 6e-108 AT1G11330 872 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.005G014802 [exp] 324 / 1e-107 AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 333 / 2e-107 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.001G413700 [exp] 333 / 2e-107 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10031602 pacid=23155917 polypeptide=Lus10031602 locus=Lus10031602.g ID=Lus10031602.BGIv1.0 annot-version=v1.0 ATGGCAGAGATTGAGAAAAATAAGTATGGAATAGGAGGGGGAGATGGCCAGAATGATACTCAGCTGAGTTTTTTCAGCTTTAAGGACGTGTTAGTTGCTA CTGATAACTTCTCTGAATCAAATAAGTTGGGAGAGGGTGGGTTTGGCCCTGTTTACAAGGGGAAGTTGAGTGGTGATCAAGAAGTAGCAATGAAGAGGCT CTCCAAGAAATCAGGTCAAGGCTTTGAGGAATTTATGAATGAGTTGAAGCTCATTGCCAAGCTGCAGCATACCTATTTGGTTAGGCTACTGGGGTGCTGT GTTGAGAGGGAAGAAAAGATACTGATATATGAGTACATGCCTAATAGAGCCTGGACAAGTTTCTCTTTGGTTGATTCCTTGTCTTTGTCTCTCTTTACGA CATGTTGTGATGGTTGGTTGCCTTCTGACTTCAGACCATGGTTTCCTGCTGATCAGTATTCGAGACTCAAGGTCATTCACAGGGACATGAAGGCAAGCAA CATTCTGCTAGATGCAGCAATGAATCCCAAGATATCAGACTTTGGGATGGCAAGGATTTTCGGGATTGATCAGGATGAAGCAAGTACCAACCGTATAGTT GGGACATATGGATATATGTCTCCTGAATACGCGTTCTATGGGCAGTTCTCAGAGAAATCTGATGTGTTCAGCTTTGGAGTGCTGCTGTTGGAGATAGTGA GCGGAAAGAGGAACAAAGATTTCTATCATCCCGAAATCCCGTTCTCCCTTCTATGTTGGGTATGGGAGTTATGGAAAGAAGGAAATCCTGAAGGGTTGAT TGACCCAGCAGTGAAGAACCGCCCCGGCTGTAATCCAACTCAAGCTATAAAGTTCATCCAAGTGGGTCTTTTGTGCGTGCAAGAAGCCCCAACTGACAGA CCAACAATGTCTTCAGTAACTCTGATGTTGTTGAGTAACGATTCACAGTCATTCCCGTCACCTGGAGAGCCGGCCTTCATCACTAGGAGAGGTGTTCATC CTGAGTGCAGTTATCAAGTTCCTGTGAATTGCTCAAACAACCAGGTTACTATGAGCTTGCCAACTGGAAGATAA
AA sequence Show only first row Show all	>Lus10031602 pacid=23155917 polypeptide=Lus10031602 locus=Lus10031602.g ID=Lus10031602.BGIv1.0 annot-version=v1.0 MAEIEKNKYGIGGGDGQNDTQLSFFSFKDVLVATDNFSESNKLGEGGFGPVYKGKLSGDQEVAMKRLSKKSGQGFEEFMNELKLIAKLQHTYLVRLLGCC VEREEKILIYEYMPNRAWTSFSLVDSLSLSLFTTCCDGWLPSDFRPWFPADQYSRLKVIHRDMKASNILLDAAMNPKISDFGMARIFGIDQDEASTNRIV GTYGYMSPEYAFYGQFSEKSDVFSFGVLLLEIVSGKRNKDFYHPEIPFSLLCWVWELWKEGNPEGLIDPAVKNRPGCNPTQAIKFIQVGLLCVQEAPTDR PTMSSVTLMLLSNDSQSFPSPGEPAFITRRGVHPECSYQVPVNCSNNQVTMSLPTGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03230			S-locus lectin protein kinase ...		Lus10031602 [exp]	0	1
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	4.0	1.0000
					Lus10002009 [exp]	4.5	1.0000
					Lus10002449 [exp]	5.5	1.0000
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10006195 [exp]	7.1	1.0000
					Lus10006079 [exp]	7.2	1.0000
					Lus10025056 [exp]	7.3	1.0000
AT5G19580			glyoxal oxidase-related protei...		Lus10011111 [exp]	7.7	1.0000
AT3G26140			Cellulase (glycosyl hydrolase ...		Lus10032312 [exp]	8.8	1.0000
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10023578 [exp]	9.5	1.0000
AT1G14220			Ribonuclease T2 family protein...		Lus10015409 [exp]	10.0	1.0000

Compare expression of checked genes

Lus10031602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.