Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 546 / 0 ARK3 receptor kinase 3 (.1) AT1G11330 539 / 3e-180 S-locus lectin protein kinase family protein (.1.2) AT1G65790 539 / 3e-180 ARK1 receptor kinase 1 (.1) AT1G61610 530 / 7e-177 S-locus lectin protein kinase family protein (.1) AT1G65800 526 / 3e-175 ARK2 receptor kinase 2 (.1) AT1G11340 526 / 2e-174 S-locus lectin protein kinase family protein (.1) AT4G21390 521 / 6e-173 B120 S-locus lectin protein kinase family protein (.1) AT4G11900 515 / 1e-170 S-locus lectin protein kinase family protein (.1) AT1G61490 508 / 1e-168 S-locus lectin protein kinase family protein (.1) AT1G61480 506 / 5e-168 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033741 [exp] 1193 / 0 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10033743 [exp] 1095 / 0 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10025891 [exp] 1062 / 0 AT4G21380 593 / 0.0 receptor kinase 3 (.1) Lus10028782 [exp] 791 / 0 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10015422 [exp] 778 / 0 AT1G11330 324 / 5e-102 S-locus lectin protein kinase family protein (.1.2) Lus10039767 [exp] 768 / 0 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039733 [exp] 764 / 0 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039731 [exp] 741 / 0 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018516 [exp] 734 / 0 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G150900 [exp] 610 / 0 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120300 [exp] 603 / 0 AT4G21380 630 / 0.0 receptor kinase 3 (.1) Potri.011G125601 [exp] 577 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 570 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028000 [exp] 556 / 0 AT4G21380 1020 / 0.0 receptor kinase 3 (.1) Potri.011G037100 [exp] 551 / 0 AT4G21380 982 / 0.0 receptor kinase 3 (.1) Potri.011G039200 [exp] 551 / 0 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 550 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.001G413800 [exp] 550 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037300 [exp] 549 / 0 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10031603 pacid=23155861 polypeptide=Lus10031603 locus=Lus10031603.g ID=Lus10031603.BGIv1.0 annot-version=v1.0 ATGGCTGACCCTTCATCTAAGCTTCTATGTGTTCACTTCTTTACTCTCCTCCTTCTGTATATACACTCTTGCATTTGCCTCGCGGCCGACAGAATCACTC CCAATAATCCCCTTCGCAACAACGAAACCATCGTCTCTGCGGGCGGTGTATTCGAGCTTGGTTTCTTCTCTCCGTCCAACTCCAACTTATCCTACGTGGG GATTTGGTACCACAATATTTTACCGCAAACCGTGGTTTGGGTTGGGAACAGAGACAATCCCATCTTTGCCTACTCACCAAAGCTGAGCCTCGTGAACGCA AACCTCATTGTTTACGGGGATGACATGTTCCAACCTGGTGTTGTTATTGCACCATCGTCGAAACTGGTAGTGTCGAATCCGGTAGCTGTGCTGCAAGACG ACGGCAATTTCGTGATAAGTGATTCTGATTCTTTCCGGCAGTGGCGGCTGTGGGGGAGCTTTAATAATCCAACGGATACACTTCTTCCAGGACAATTGTT CCTCAAAGGCCAACTCTTGATTTCCTGGAACAGTAAATGGGATCCAGGTCAAGGTCCATACTCACTCCACTCAAACCGCGGAGGGACGGGTGATTATGTA ACCCTTTACCATAATGTTTCTACGATGTACTCAATTCCCCCAAAGAAATTCGAGATCGGCTCAGTTCCCCTTTCTTTCAACTTCAATAATTATGGGTTCG TGAAAACTCGAATCATCATGAACAGTGAAGGGATGGTTCAGAGACTATCTTGGGTTGAAGCTTCGAAAAATTGGTCCTTAGACTGGCAGGAGCCACAAGA CCACTGTCAGATTTTTGGCTACTGCGGCCCATTTGGGAGCTGCGACAAGGGCTCGAATCCTCTATGTCGCTGTGCAACCGGGTTTATTCCGAAGTCAGAG AAAGAATGGAGCCTCGGAAATTTCTCCAGGGGCTGCCTGAGGAAGTCTAGTTTAGGATGTAGGAATTCTGGAGGAGGTAATGATAATAATGATGATATGT TTGTTCAAGGATATGGGGCAAAAGATCTGGATGGGCAGTCGTCAATTGAGGGTTTAAGTTATGTTGGTAGTGGTCAGCTATGTGAATCGGTTTGTTCTTC TAACTGCAATTGTACTGCTTATTTTTATCAGAGCAATAGGTGTTCCATTTGGACAGGGGACGTTTTTAATCTCCACAAACTCAGTAAAGATCAATATAAC CACACTGTGTACATTAGGATTGCAGGTTCTAAGAAACTAGATAATGTTATAAAGAATCCTGACCATGTTCGGAGTAGTAGAAAGAGACAAGTGATTATTG GGGCTATTGTTGGCTCTGTGGTGGCTGGTATTCTAGTTAACCTTCTGGGTTTGTTCTTCATATTGAGAAGAAATAGCACGCAGAAAGCGGCAGTGAACAT GGCTGAGGTTGAGCAGAATAAGTATGGAATAGGAGGAGATGGCCAGAATGATACCCAGTTGAGCTTTTTTAGCTTTAAGGATGTGTTAGTTGCTACTGAT AACTTCTCTGAATCAAACAAGTTGGGCGAGGGTGGGTTTGGTCCCGTTTACAAGGGGAAGTTGAGTGATGATCAAGAAGTAGCAATGAAGAGGCTTTCCA AGAAATCGGGTCAAGGGTTGGAGGAATTTATGAATGAGTTGAAGCTCATAGCCAAGCTGCAGCATACCTATTTGGTCAGGCTATTGGGATGCTGTGTTGA GAGTGAAGAAAAGATACTGATATATGAGTATATGCCTAATAAGAGCTTGGACAAGTTTCTCTTTGGGTCATCTGATAAGGCGAAGCTAGACTGGGGACAA CGAGTAAAGATAGCGGAAGGTGTAGCTCAAGGACTGCTATACATCCACAAGTATTCAAGGCTGAAAGTCATTCACAGGGACATGAAGGCAAGCAATGTTC TGCTGGACGCAGGGATGAATCCCAAGATATCGGACTTTGGGATGGCACGGATTTTTGGGATTGATCAGGATGAAGCAAGCACCAACCGAATAGTTGGGAC ATACGGATATATGTCTCCTGAATATGCAAACTACGGGCAGTTCTCGGAGAAATCAGACGTGTTTAGCTTCGGAGTGTTATTATTGGAGATAGTGAGTGGA AAGAGGAACAAAGATTTCTATTATCATGAGATACCATTCTCCCTTCTATGTTGGGTGTGGGAGCTATGGAAAGAAGGGACACCTCAAGAGGTGATTGATC CAGCAGTGAAGAACAGCCCCTGCTGTAATCCAGCTGAAGCTGTAAAGTTCATCCAAGTGGGTCTTTTGTGTGTGCAAGAAGCTCCAGCTGATAGGCCAAC AATGTCTTCAGTATCTCTGATGTTGTTGAGTAAGGATTCTCAGTCATTCCCGTCACCTGGAGAACCGGCCTTCATCACTCGGAGAAGTGTTCATCCTCAG TTCAGTTATGAATTTCCCTCGACTTGCTCAAACAACCAGGTTACAATGAGCTTTCCAACTGGTAGATGA
AA sequence Show only first row Show all	>Lus10031603 pacid=23155861 polypeptide=Lus10031603 locus=Lus10031603.g ID=Lus10031603.BGIv1.0 annot-version=v1.0 MADPSSKLLCVHFFTLLLLYIHSCICLAADRITPNNPLRNNETIVSAGGVFELGFFSPSNSNLSYVGIWYHNILPQTVVWVGNRDNPIFAYSPKLSLVNA NLIVYGDDMFQPGVVIAPSSKLVVSNPVAVLQDDGNFVISDSDSFRQWRLWGSFNNPTDTLLPGQLFLKGQLLISWNSKWDPGQGPYSLHSNRGGTGDYV TLYHNVSTMYSIPPKKFEIGSVPLSFNFNNYGFVKTRIIMNSEGMVQRLSWVEASKNWSLDWQEPQDHCQIFGYCGPFGSCDKGSNPLCRCATGFIPKSE KEWSLGNFSRGCLRKSSLGCRNSGGGNDNNDDMFVQGYGAKDLDGQSSIEGLSYVGSGQLCESVCSSNCNCTAYFYQSNRCSIWTGDVFNLHKLSKDQYN HTVYIRIAGSKKLDNVIKNPDHVRSSRKRQVIIGAIVGSVVAGILVNLLGLFFILRRNSTQKAAVNMAEVEQNKYGIGGDGQNDTQLSFFSFKDVLVATD NFSESNKLGEGGFGPVYKGKLSDDQEVAMKRLSKKSGQGLEEFMNELKLIAKLQHTYLVRLLGCCVESEEKILIYEYMPNKSLDKFLFGSSDKAKLDWGQ RVKIAEGVAQGLLYIHKYSRLKVIHRDMKASNVLLDAGMNPKISDFGMARIFGIDQDEASTNRIVGTYGYMSPEYANYGQFSEKSDVFSFGVLLLEIVSG KRNKDFYYHEIPFSLLCWVWELWKEGTPQEVIDPAVKNSPCCNPAEAVKFIQVGLLCVQEAPADRPTMSSVSLMLLSKDSQSFPSPGEPAFITRRSVHPQ FSYEFPSTCSNNQVTMSFPTGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03230			S-locus lectin protein kinase ...		Lus10031603 [exp]	0	1
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010437 [exp]	5.4	0.9339
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10009313 [exp]	8.5	0.9330
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10015737 [exp]	10.4	0.9319
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10003468 [exp]	11.0	0.9278
AT1G23460			Pectin lyase-like superfamily ...		Lus10029139 [exp]	11.3	0.9297
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034505 [exp]	11.5	0.9087
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004043 [exp]	12.2	0.8451
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10033256 [exp]	15.0	0.9186
AT4G34500			Protein kinase superfamily pro...		Lus10040459 [exp]	15.7	0.8712
AT3G22640		PAP85	cupin family protein (.1)		Lus10022072 [exp]	19.7	0.9078

Compare expression of checked genes

Lus10031603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.