Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26690 808 / 0 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT5G55480 795 / 0 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT1G66970 789 / 0 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT1G66980 768 / 0 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT3G20520 662 / 0 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1) AT5G58170 620 / 0 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT5G58050 610 / 0 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT1G74210 83 / 1e-16 AtGDPD5 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1) AT5G08030 83 / 1e-16 AtGDPD6 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014903 [exp] 1234 / 0 AT4G26690 833 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10016584 [exp] 1188 / 0 AT4G26690 801 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10018042 [exp] 1091 / 0 AT5G55480 721 / 0.0 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) Lus10032576 [exp] 1080 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10043171 [exp] 866 / 0 AT4G26690 665 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10019605 [exp] 494 / 7e-165 AT5G58170 670 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040037 [exp] 410 / 5e-132 AT1G66980 580 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10019606 [exp] 379 / 1e-121 AT5G58170 454 / 9e-151 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040036 [exp] 374 / 2e-120 AT5G58170 520 / 6e-177 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360800 [exp] 886 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.001G360700 [exp] 882 / 0 AT4G26690 835 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.018G110600 [exp] 612 / 0 AT5G58050 870 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) Potri.006G187600 [exp] 603 / 0 AT5G58170 893 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Potri.015G058400 [exp] 81 / 9e-16 AT1G74210 611 / 0.0 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10031604 pacid=23155784 polypeptide=Lus10031604 locus=Lus10031604.g ID=Lus10031604.BGIv1.0 annot-version=v1.0 ATGTCTGCTCTTGTTCTGCTCCTCCCTCTTCTGCTTCACTCATTTTCAGCTTTGGTCTCTGCTTGGCAGGGATCTACTCCTACCTGGAACACTCTCTCCG GAAATCGCCCCTTGGTCGTAGCTCGGGGTGGATTTTCAGGTCTATTCCCGGATTCTTCCTCCCTCGCTTATCAGTTTGCGCAGGCGATCAGTGTCCCCGA TGTTATCCTCTGGTGTGATTTGCAGCTCACCAAAGATGCATCCGGGATTTGCGCTCCTGACCTCAAGCTTGATAATTCTACTGATATCAGTAACGTTTAC AATAGCCGTCAGGGTACCTACAGAGTCAATGGCGTTTCGCAAGATGGATGGTTTCCATCCGATTTCACAATCGAGGAGCTGTCAACTGTTTCCTTAACAC AGGGAGTATATTCTCGCAGTTCATATTACAATTCGAAGAAGTTCCCAATCCTTACTGTTGATAATGTTGCTGGATTAAAGCCTGCTGGTCTCTGGTTAAA TGTTCAGCATGATAAATTCTACAGACAGAAGAATTTGAGTATGAGAAGCTATGTTCTTGCTGCATATAAAAGAGTCGTTATAAACTACATTTCTTCTCCC GAAGTAGGGTTCTTGACAAGTATTTCTCGACGATTCAACCCAAACATCACCAAACTGTTCTTCCGGTTCAACGGGAAGAATGAGATTGAGCCTACATTGA ACCGGACTTATGGTTCTCTATTGCGAAATTTAACATTTGTCAGGACATTTGCCTCTGGAATTATTGTTCCTAAGACTTACATATGGCCTGTGGATGCAAG TAATTATCTGAAATCCAGTAGTTATCCTGTTGTCTCGGACGCGCACAAAGCTGGGCTCGAAGTTTTTGCCTCGGACTTTTTCAACGACGCTGCTCTGAGT TACGATTACAGTTATGATCCAGTATCTGAATATCTGAACTTTGTTGACAATGGTCAGTTCTCCGTTGATGGTGTGCTGTCTGACTACCCGATAACTCCAT CTGCCGCATTTGATTGCTTCTCTCATCTGGGCCAGAATGCTTCAGAAAACGTCAAGTTTTTGGTGGTCTCGAAAAACGGTGCAAGTGGAGACTATCCTGG TTGTACCGATATTGCATACCGAACTGCTATCTCAGACGGTGCGGATGTTATCGATTGTCCAATCCAGATGTCTCAAGATGGAGTCCCATTCTGCCAAAGC TCTATAAATCTTATGGAGACTACAAATGCTGCTCAAATGTTGAATAACTTCTCAACAAGTGTTCCAGAGCTCCTACCAGGCAATGGAATATATTCCTTTA GTTTACCATGGACACAGATTCAGACTTTGACTCCGGTCATATCCAATCCATATTCAAACTTTCAGTTGTACAGGAATCCAAAGATGAGAAATGCCAGGAA GTTGGTATCCCTAGCTGAATTCTTGGCATTGGCGAACGACAATGCGAAATCTCTGTCTGGTGTACTAATCAAGATCGAGAACGCAGCATATCTGATGGAG AAGCAGGGGCTGGCTGTACTCGATGCGGTTGAGAGAGAGTTGGAAAAAGCTGGTTACGGTAATCAGACAGCTCTGAAAGTAATGGTTCAGTCCGCCAACA GCTCGGTTCTAATGAAGCTGAAGGATAAGAAAAACAAGTACGAGATGGTGTACCAGGTTGATGAGACAATCGGCAGTGCGGAGCCTTCAGCCATTAAAGA CATGAAGGGATTTGCTGATTCTGTAATGATCAGCAAGACATCGGTGTTCCCTGTTAACGAGTTCTTCCTCACTGGAATAACCGATGTTGTGTCAAGGCTA CGATCGGCTGAACTCCGTGTCTACGTGGAAACATTCAGCAATGAGTTTGTGTCTCAACCATGGGACTTCTTTGCAGATGCCAACGTGGAACTCAACACCT ATATCACCGGAACCAGCATTACCGGTGTTGTTACAGACTTTCCCAAGACATCTGCCAGATTCAAAAAGAACACATGTTCTGGAAGAGGCGACGCTACCCC GGCTTACATGTTCCCTGTTCAGGCAGGTAGCCTGCTAGGAGTAATTCAACCTGTATCGATGCCACCAGCTCAAGCTCCAAGCCCGCCTCTAACTAAGAAC GATATCGCGGAGGCACCTTTGCCGGACAAGCCTACGACTCCTACTCCACCAGGTGCAGGAGCTACACAACCAAGTCCATCAAACGGGGAACCAAAGGTGG GAGCCCGTTGTGTCACAGTTTGGAGAGTGACTATGCTGCTTATCACAGCAATTTTGTTGCTTTGA
AA sequence Show only first row Show all	>Lus10031604 pacid=23155784 polypeptide=Lus10031604 locus=Lus10031604.g ID=Lus10031604.BGIv1.0 annot-version=v1.0 MSALVLLLPLLLHSFSALVSAWQGSTPTWNTLSGNRPLVVARGGFSGLFPDSSSLAYQFAQAISVPDVILWCDLQLTKDASGICAPDLKLDNSTDISNVY NSRQGTYRVNGVSQDGWFPSDFTIEELSTVSLTQGVYSRSSYYNSKKFPILTVDNVAGLKPAGLWLNVQHDKFYRQKNLSMRSYVLAAYKRVVINYISSP EVGFLTSISRRFNPNITKLFFRFNGKNEIEPTLNRTYGSLLRNLTFVRTFASGIIVPKTYIWPVDASNYLKSSSYPVVSDAHKAGLEVFASDFFNDAALS YDYSYDPVSEYLNFVDNGQFSVDGVLSDYPITPSAAFDCFSHLGQNASENVKFLVVSKNGASGDYPGCTDIAYRTAISDGADVIDCPIQMSQDGVPFCQS SINLMETTNAAQMLNNFSTSVPELLPGNGIYSFSLPWTQIQTLTPVISNPYSNFQLYRNPKMRNARKLVSLAEFLALANDNAKSLSGVLIKIENAAYLME KQGLAVLDAVERELEKAGYGNQTALKVMVQSANSSVLMKLKDKKNKYEMVYQVDETIGSAEPSAIKDMKGFADSVMISKTSVFPVNEFFLTGITDVVSRL RSAELRVYVETFSNEFVSQPWDFFADANVELNTYITGTSITGVVTDFPKTSARFKKNTCSGRGDATPAYMFPVQAGSLLGVIQPVSMPPAQAPSPPLTKN DIAEAPLPDKPTTPTPPGAGATQPSPSNGEPKVGARCVTVWRVTMLLITAILLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10031604 [exp]	0	1
AT1G61390			S-locus lectin protein kinase ...		Lus10031605 [exp]	1.0	0.9361
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10024644 [exp]	5.8	0.8917
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10018390 [exp]	9.6	0.8906
AT3G53810			Concanavalin A-like lectin pro...		Lus10029315 [exp]	9.7	0.8377
AT5G25390	AP2_ERF	SHN3, SHN2	shine3, Integrase-type DNA-bin...		Lus10002912 [exp]	11.4	0.8643
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10007624 [exp]	12.4	0.8652
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10032278 [exp]	12.8	0.8776
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003107 [exp]	13.6	0.8746
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	15.5	0.8653
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10002015 [exp]	15.9	0.8647

Compare expression of checked genes

Lus10031604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.