Plant FIBer expression Database

Lus10031606 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033740
[exp]
360 / 2e-127 ND /
Lus10033739
[exp]
125 / 1e-34 ND 41 / 5e-04
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10031606 pacid=23155934 polypeptide=Lus10031606 locus=Lus10031606.g ID=Lus10031606.BGIv1.0 annot-version=v1.0
ATGAAGAGAATCGGTTCACGAAACAAGTTGCTGGCCTGCTTTCGCCCGGATTTTCCCATGGAAGAGATGATCTCCGACGATGGGTTGTTCCTCACCAGAT
CCAAGTCCGCCGCTTTACTCGCCGTCGAGAAAAATTCGAAGCCAATCCTGCATCGCTCTGTTTCCGATTGCTCTGCTTCGACAGCCGGCGTAAATTCTGA
GACCTCCGATTCCGACGATACTACAGTCGTTGAGCACCGTATTCGAAAGAGGAAAAGCTTTTCCCGTGCTGTCAAGTCCGTTGTTTCCGATCTCTTCCAT
TCGAAATCTAAAAACCGGAGATCCAGGATCAGAAGCTCCGACTTGACCACCCGGTCGGATTCGGACCCGGAAGAGCACGATGCTACCCGAAAGGAATCGT
GCTCGTCGGTTTTGGGTTCGGACCCGGAGAACAACCCAACGGCGGGGAAGATTCGAAGATCCGACCCCGAACCTGAACAGAAGAAAGCGGGCAATTTGAC
ATTGTTTGTACTGCTGTTAGTGAGTTTAGCGGTGACGGTACTCGGTGGTCAGTTACTGGGCGTGGCGTTGACTTCGATTAGTTTGTATTCAATCCCTCAC
CGGCGGGTGATTGTCGGTGGGTCGTCGGAAACAGAGTGCCGAAGAAAACAGAGGGGGGTGATGGAAGGAGGGATGAGGAGGAGCCACCGGCGGCAGAATC
TTCAGAGCATGGCATGA
AA sequence
>Lus10031606 pacid=23155934 polypeptide=Lus10031606 locus=Lus10031606.g ID=Lus10031606.BGIv1.0 annot-version=v1.0
MKRIGSRNKLLACFRPDFPMEEMISDDGLFLTRSKSAALLAVEKNSKPILHRSVSDCSASTAGVNSETSDSDDTTVVEHRIRKRKSFSRAVKSVVSDLFH
SKSKNRRSRIRSSDLTTRSDSDPEEHDATRKESCSSVLGSDPENNPTAGKIRRSDPEPEQKKAGNLTLFVLLLVSLAVTVLGGQLLGVALTSISLYSIPH
RRVIVGGSSETECRRKQRGVMEGGMRRSHRRQNLQSMA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10031606
[exp]
0 1
AT4G28290 unknown protein Lus10033693
[exp]
1.7 0.8858
AT1G18740 Protein of unknown function (D... Lus10028578
[exp]
6.9 0.8845
AT3G57450 unknown protein Lus10029496
[exp]
8.3 0.9117
AT4G16820 PLA-I{beta]2 phospholipase A I beta 2, alph... Lus10004364
[exp]
10.9 0.8924
AT1G74450 Protein of unknown function (D... Lus10042809
[exp]
11.4 0.8795
AT5G46230 Protein of unknown function, D... Lus10000616
[exp]
13.6 0.8236
AT1G01260 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) ... Lus10030243
[exp]
17.3 0.8498
AT1G09070 (AT)SRC2, (AT)S... soybean gene regulated by cold... Lus10004500
[exp]
17.3 0.8512
AT5G01710 methyltransferases (.1) Lus10022682
[exp]
17.9 0.8502
AT1G01260 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) ... Lus10005966
[exp]
19.1 0.8532

Lus10031606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.