Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03270 173 / 2e-51 CYCD6;1 Cyclin D6;1 (.1) AT1G70210 89 / 6e-20 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G10440 74 / 1e-14 CYCD4;2 cyclin d4;2 (.1) AT5G65420 71 / 6e-14 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G67260 72 / 1e-13 CYCD3;2 CYCLIN D3;2 (.1) AT2G22490 71 / 2e-13 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT3G50070 68 / 2e-12 CYCD3;3 CYCLIN D3;3 (.1) AT4G34160 64 / 3e-11 CYCD3;1 CYCLIN D3;1 (.1) AT4G37630 56 / 1e-08 CYCD5;1 cyclin d5;1 (.1.2) AT5G02110 43 / 0.0002 CYCD7;1 CYCLIN D7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033736 [exp] 501 / 3e-179 AT4G03270 221 / 5e-70 Cyclin D6;1 (.1) Lus10039738 [exp] 283 / 1e-93 AT4G03270 243 / 1e-78 Cyclin D6;1 (.1) Lus10018520 [exp] 175 / 4e-52 AT4G03270 163 / 4e-48 Cyclin D6;1 (.1) Lus10018411 [exp] 135 / 3e-37 AT4G03270 152 / 4e-44 Cyclin D6;1 (.1) Lus10002587 [exp] 134 / 2e-36 AT4G03270 169 / 8e-51 Cyclin D6;1 (.1) Lus10029194 [exp] 90 / 3e-20 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 89 / 1e-19 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10027874 [exp] 78 / 1e-15 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1) Lus10024796 [exp] 72 / 1e-13 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118600 [exp] 251 / 1e-81 AT4G03270 244 / 2e-79 Cyclin D6;1 (.1) Potri.013G149000 [exp] 231 / 7e-74 AT4G03270 231 / 1e-74 Cyclin D6;1 (.1) Potri.011G040900 [exp] 197 / 7e-61 AT4G03270 213 / 1e-67 Cyclin D6;1 (.1) Potri.004G032100 [exp] 183 / 2e-55 AT4G03270 216 / 6e-69 Cyclin D6;1 (.1) Potri.011G040500 [exp] 163 / 3e-48 AT4G03270 178 / 7e-55 Cyclin D6;1 (.1) Potri.008G146600 [exp] 97 / 1e-22 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.010G095200 [exp] 91 / 2e-20 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.002G103500 [exp] 87 / 8e-19 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.005G157800 [exp] 80 / 2e-16 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.002G119000 [exp] 79 / 2e-16 AT4G37630 119 / 4e-31 cyclin d5;1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031608 pacid=23155886 polypeptide=Lus10031608 locus=Lus10031608.g ID=Lus10031608.BGIv1.0 annot-version=v1.0 ATGGAGGAATTCGACCTCGAAAACCCACTAACAAACAACACAGAACTCCACTCCAATTCTTCCCATTCACTCTTCTTCATCGAATCTGAACACACTCCTT CCATCTCCGTCTCCATCTCCCTCATTTCCTTTCGCCAGGAAACCATTTCCTCCATCTCACAGGTCTCCTCATGTAGCTTCTTCAGTAATACACAATTCCT GTCCTATCTCGCTGTCAACTACCTCGACCGGTTCATATCCAGCAATGTCATTCCTGTAATTACGTCTCCTCAAAACAAGCCATGGCTGGTCAAGCTTCTT GCAGTCTCCTGCGTTTCTCTAGCAGATAAAATGATGAACATAACCACAGATTCATCCCTTAAAAACATACAGAAACAGGGGAATGTTAATGTCAAATTCG GATTCGGATTCGGATTCGACCCGAGAACGATTCAGAGAATGGAGAGGCTAATCCTCGGAGCATTGAAATGGAGAATGCGATCCGTGACTCCTTTCTCCTT CCTGTCCTTGTTCGCCGCTTACTTCAAACTCAAAGATCCGCCATTGTTGCAGGCGCTCAGAGCTCGAGCCACCCAAATCATCCTCAGAGCTCAAATCGAG GTGAAGATGATGGGAGTAAAGCCATCAGTGGTTGCTGCATCGGCGCTTCTGGCAGCCTGTCATGAGCTTTTCCCGTTGCAGTTCTCGTGCTTCAGAGATG GGATTCTCAGCTGCTCGTATGTAAATAAGGAAGTGATGGCGGAGAGCTACAAGGAGATGCAAGAGCTGGCAATGGAAGAGTACGAGTCAGTGATGGACAG ATCAGTGTCATCCAGCTCCTCCGATACGCCGGTCAACGTCCTTGACCACCGATTCTCGAGCTCGTCATCAGAGGACCAACTGAAAGCTACCGGGACCATC TTCTCCACCGCCAGTAGCAGCAGCAGAAGAAGCAGTGCTGGTACTGGCGAAGTGGTTATAATAACGCCAGAGAGTGAGGACAGAGAGACAAAGAAGAAGA AGACGATGATTATTACCAACGGTAACAAAAGTGGCAAAAGAAGGAAGACTAATGATTACTGCTGA
AA sequence Show only first row Show all	>Lus10031608 pacid=23155886 polypeptide=Lus10031608 locus=Lus10031608.g ID=Lus10031608.BGIv1.0 annot-version=v1.0 MEEFDLENPLTNNTELHSNSSHSLFFIESEHTPSISVSISLISFRQETISSISQVSSCSFFSNTQFLSYLAVNYLDRFISSNVIPVITSPQNKPWLVKLL AVSCVSLADKMMNITTDSSLKNIQKQGNVNVKFGFGFGFDPRTIQRMERLILGALKWRMRSVTPFSFLSLFAAYFKLKDPPLLQALRARATQIILRAQIE VKMMGVKPSVVAASALLAACHELFPLQFSCFRDGILSCSYVNKEVMAESYKEMQELAMEEYESVMDRSVSSSSSDTPVNVLDHRFSSSSSEDQLKATGTI FSTASSSSRRSSAGTGEVVIITPESEDRETKKKKTMIITNGNKSGKRRKTNDYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10031608 [exp]	0	1
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10042007 [exp]	1.4	0.9796
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031108 [exp]	1.4	0.9795
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10018518 [exp]	2.4	0.9737
AT1G67040			unknown protein		Lus10017607 [exp]	2.6	0.9640
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10036496 [exp]	3.2	0.9712
AT2G28490			RmlC-like cupins superfamily p...		Lus10011364 [exp]	3.5	0.9736
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	4.9	0.9669
AT3G25670			Leucine-rich repeat (LRR) fami...		Lus10027239 [exp]	5.5	0.9427
AT3G49950	GRAS		GRAS family transcription fact...		Lus10039709 [exp]	6.0	0.9608
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Lus10035382 [exp]	6.0	0.9554

Compare expression of checked genes

Lus10031608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.