Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34270 670 / 0 Exostosin family protein (.1) AT2G35100 263 / 1e-82 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G44930 256 / 4e-80 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT1G67410 238 / 4e-73 Exostosin family protein (.1) AT3G45400 238 / 1e-72 exostosin family protein (.1) AT1G74680 234 / 3e-71 Exostosin family protein (.1) AT3G03650 230 / 2e-69 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT5G16890 224 / 3e-67 Exostosin family protein (.1) AT4G32790 79 / 3e-15 Exostosin family protein (.1) AT4G38040 71 / 6e-13 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033734 [exp] 911 / 0 AT1G34270 684 / 0.0 Exostosin family protein (.1) Lus10038355 [exp] 261 / 7e-82 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10036219 [exp] 263 / 4e-81 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10015791 [exp] 228 / 4e-69 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10037016 [exp] 227 / 9e-69 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10039145 [exp] 224 / 5e-67 AT5G16890 679 / 0.0 Exostosin family protein (.1) Lus10002060 [exp] 222 / 2e-66 AT1G74680 537 / 0.0 Exostosin family protein (.1) Lus10003870 [exp] 219 / 2e-65 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10020308 [exp] 218 / 1e-64 AT3G45400 622 / 0.0 exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G086800 [exp] 716 / 0 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.013G116200 [exp] 692 / 0 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.012G124600 [exp] 254 / 4e-79 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.015G124800 [exp] 252 / 4e-78 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.008G034500 [exp] 246 / 4e-76 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.002G210000 [exp] 225 / 1e-67 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.019G044600 [exp] 221 / 5e-66 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.019G049800 [exp] 220 / 9e-66 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.013G067400 [exp] 216 / 6e-64 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.005G055000 [exp] 80 / 3e-18 AT3G45400 145 / 5e-43 exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10031610 pacid=23155844 polypeptide=Lus10031610 locus=Lus10031610.g ID=Lus10031610.BGIv1.0 annot-version=v1.0 ATGGCGTTCTATTCTGCAGATACTTTAATGGTGGGTGGCTACAACAAAAGAACTCAACTTCCATGTTCAATTGTTTCAACTTTCTTAGCATTCACAACTA TTTCCCTCCTTTCTTTATTTTACTTCAACTTCTACTCAACCTCATCGTCTCACAAGTTTATAACATCCCAAACCCATATCAACACTCCCCAAAACTCCAT CAAAGTCTATGTAGCAAACCTCCCCAGGTCTCTAAACTATGGTCTCTTGGAGAGATACTGGGCCTCGTGGGGACCTGATACTCGAATTAGCAACGATCCA GATCACCCTCCGGGCGGAAAGAAGAAGGCCGCTTCTTTACGTGGAGACACCAAGTTCCCTCCTTACCCGGAGAATCCAGTGATCAAGCAGTACAGCGCTG AGTACTGGATCTTGGGGGACTTGATGACGCCAGAGAATTCGAGGACGAATTCGTTCGCGAAGAGGGTGTTTGATGAAAGGGAGGCTGATGTTGTATTCGT GCCCTTTTTTGCCGCGTTGAGTACAGAGATGGAGCTTGCCAGGGGGAAAGGTACGTTTAGGAAGAAGGATGGGAACGAGGATTATCAAAGGCAGAAGGAG ACGCTCGATTTTGTTATGAACACGGAAGCTTGGAAGCGATCTGGTGGTCACGATCATGTTTTTGTTCTCACTGACCCGGTAGCGATGTGGCATGTGAAAG CTCAGATAGCTCCAGCTGTTCTTCTGGTTGTTGATTTCGGTGGCTGGCATAGGCTTGACTCGAAATCATCAAATGGAAGCTCGTCGGGCAGGATACAACA TACTCAAGTTTCTCTGCTCAAAGATGTGATAGTTCCTTACACACACTTACTCCCTCGGTTGTCCTTGTCGGAGAATTCGAAGCGCAACACTCTTCTGTAC TTCAAAGGAGCCAAACATAGGCACGGGGGCGGTGTGGTTCGAGAAAAATTATGGGACTTGCTGGTTAACGAGCCAGGAGTTATAATGGAAGAAGGGTTTC CTAATTCAACCGGAAGGGAGCAATCGATAAGAGGGATGAGAACATCGGAGTTCTGTCTCCACCCAGCCGGAGACACCCCAACTTCCTGCCGTTTATTCGA TGCCATCCAAAGCCTATGCATTCCAGTCATCGTCAGCGACAGCATCGAGCTTCCATTCGAAGGTACGGTAGATTACTCCGAATTCTCCGTTTTCATAGCA GTCTCGGACGCCTTGAAGCCGGACTGGCTCATACATCATCTGCGAGGCATCTCTGAGCGGCAGAAGGAACGATTTCGTCGTGAGATGTCGATGGTGCAGC CGATTTTCCAGTACGACAGCGGACATCCTGGCGGGATTGGACCGGTACCTCCGGACGGTGCGGTGAACTACATATGGAGAAAGGTGCACCAGAAGTTGCC CATGATTAAGGAAGCTATTGTGAGAGAGAAGAGGAGGCCTCCTGGTGTTTCTGTTCCTCTGCGTTGCCAATGTACTTGA
AA sequence Show only first row Show all	>Lus10031610 pacid=23155844 polypeptide=Lus10031610 locus=Lus10031610.g ID=Lus10031610.BGIv1.0 annot-version=v1.0 MAFYSADTLMVGGYNKRTQLPCSIVSTFLAFTTISLLSLFYFNFYSTSSSHKFITSQTHINTPQNSIKVYVANLPRSLNYGLLERYWASWGPDTRISNDP DHPPGGKKKAASLRGDTKFPPYPENPVIKQYSAEYWILGDLMTPENSRTNSFAKRVFDEREADVVFVPFFAALSTEMELARGKGTFRKKDGNEDYQRQKE TLDFVMNTEAWKRSGGHDHVFVLTDPVAMWHVKAQIAPAVLLVVDFGGWHRLDSKSSNGSSSGRIQHTQVSLLKDVIVPYTHLLPRLSLSENSKRNTLLY FKGAKHRHGGGVVREKLWDLLVNEPGVIMEEGFPNSTGREQSIRGMRTSEFCLHPAGDTPTSCRLFDAIQSLCIPVIVSDSIELPFEGTVDYSEFSVFIA VSDALKPDWLIHHLRGISERQKERFRREMSMVQPIFQYDSGHPGGIGPVPPDGAVNYIWRKVHQKLPMIKEAIVREKRRPPGVSVPLRCQCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34270			Exostosin family protein (.1)		Lus10031610 [exp]	0	1
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	4.9	0.8598
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10036219 [exp]	7.3	0.8433
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10038355 [exp]	9.8	0.8368
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	10.2	0.8450
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10027651 [exp]	12.8	0.8175
AT2G27950			Ring/U-Box superfamily protein...		Lus10021403 [exp]	16.7	0.8329
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007949 [exp]	21.9	0.8214
AT3G24715			Protein kinase superfamily pro...		Lus10038160 [exp]	22.9	0.7837
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10006585 [exp]	26.2	0.8170
AT1G21830			unknown protein		Lus10018177 [exp]	26.8	0.8318

Compare expression of checked genes

Lus10031610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.