Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20900 697 / 0 DGK5, ATDGK5 diacylglycerol kinase 5 (.1.2.3.4) AT4G28130 607 / 0 DGK6, ATDGK6 diacylglycerol kinase 6 (.1) AT4G30340 243 / 1e-73 ATDGK7 diacylglycerol kinase 7 (.1) AT2G18730 240 / 1e-72 ATDGK3 diacylglycerol kinase 3 (.1) AT5G57690 235 / 8e-71 ATDGK4 diacylglycerol kinase 4 (.1) AT5G63770 149 / 1e-38 ATDGK2 diacylglycerol kinase 2 (.1.2) AT5G07920 122 / 6e-29 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033732 [exp] 936 / 0 AT2G20900 730 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10039747 [exp] 780 / 0 AT2G20900 751 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10018527 [exp] 693 / 0 AT2G20900 681 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10015514 [exp] 252 / 3e-77 AT4G30340 707 / 0.0 diacylglycerol kinase 7 (.1) Lus10019987 [exp] 251 / 1e-76 AT4G30340 713 / 0.0 diacylglycerol kinase 7 (.1) Lus10006991 [exp] 242 / 7e-73 AT2G18730 677 / 0.0 diacylglycerol kinase 3 (.1) Lus10010896 [exp] 143 / 6e-36 AT5G63770 955 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10012719 [exp] 142 / 1e-35 AT5G63770 957 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10008907 [exp] 125 / 5e-33 AT2G18730 322 / 1e-109 diacylglycerol kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G148500 [exp] 729 / 0 AT2G20900 765 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.001G408500 [exp] 663 / 0 AT2G20900 695 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.018G096700 [exp] 246 / 6e-75 AT2G18730 702 / 0.0 diacylglycerol kinase 3 (.1) Potri.006G174700 [exp] 242 / 1e-73 AT4G30340 670 / 0.0 diacylglycerol kinase 7 (.1) Potri.007G097900 [exp] 148 / 7e-38 AT5G63770 933 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.005G070900 [exp] 141 / 2e-35 AT5G63770 897 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.012G066300 [exp] 123 / 2e-29 AT5G07920 1154 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Potri.006G172400 [exp] 42 / 3e-05 AT5G57690 83 / 2e-20 diacylglycerol kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00609 [flax] [poplar] DAGK_acc Diacylglycerol kinase accessory domain CL0240 [flax] [poplar] PFK PF00781 [flax] [poplar] DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10031612 pacid=23155979 polypeptide=Lus10031612 locus=Lus10031612.g ID=Lus10031612.BGIv1.0 annot-version=v1.0 ATGGGTAATCACGCGCCACCGCCGCCTGCAGCAGTTGCCGAAGAAGGGAGGGAGGGCGAAGACGGCGGTTGCCGGAGCAGCAGGAGAAAACCCGGCCGGC CATGTTTCAGATTACGCAAGATGGAAGCAATGGATTCAAACGAGGAGGCGAATTTTCTGAAGGATTTCTACATCCCTACGTATGTAGTCGCGCCAGAATC AGAGGCTGGGAGTGTTGTGCCTGTAGTCGCGCCAGAATCAGAGGCCGGGAGTGTTGTGCCTAAGGAGCCGAAGTGTCCAGTTCTGGTGTTCATCAACTCC AAGAGTGGTGGTCAGCTTGGCCGGCATCTTCTCCTAACATATCGATCGGTTCTAAATGAACATCAGGTCTTTGATCTTGGGGAGGAAACACCTGATAAAG TTCTGAGGAAGATATATTTGAATATTGAGAGGCTTAAATGTGGAAGAGACAAGCTTGCTGCTACGATTCAGGAGAGATTGAAAATCATTGTTGCTGGTGG TGATGGAACTGCTGGCTGGCTTCTGGGAGTTGTATGTGATCTGAAGTTTCCTCATCCGCCTCCAATTGTGACTGTTCCTTTGGGAACCGGAAACAATCTT CCGTTTGCTTTTGGCTGGGGGAGGAAAAATCCTGGGACGGATCGTCAATCTGTAGTTTCCTTTCTGAAGGAAGTGACGAAAGCAAAGGAAATGAAAATAG ACAACTGGCACATTCTGATGAGGATGAAAACCCCTAAAGAAGGTTCTTGTGACCCCATTGCACCTCTCGAGCTACCACATTCTCTACATGCAGTTCATCG TGTCTCTTCTTCAGACGAATTGAACAAGGAAGGCTGTACCACATTTCGCGGTGGATTCTGGAACTACTTTAGCCTGGGCATGGATGCTCAAGTATCTTTT GCATTCCATTCTGAGAGAAAACGGCATCCTGAAAAATTCAAGAACCAGCTTGTTAATCAGAGCACTTACGCAAAGCTCGTTGGTACACAAGGATGGTTTT GTCCTTCGGTATTTCAATCCGACTCAAGGATAGCTAGCCTGCTAAAGGTGAAAGTCATGAGACGACTCGGGCACTGGGAAGATCTAACTATACCAAACGG CATAAGATCAATAGTGTGCCTCAACTTGCCCAGCTTTTCTGGCGGACTCAATCCTTGGGGAACACCCAGTAGTTGGAAAAGCCGCGATAGACAGTTAACC CGACCATATGTGGACGATGGCCGGATCGAGGTGGTTGGTTTTCGAGACGCTTGGCATGGACTCGTTCTGCTCGCACCGAAAGGACATGGAACTCGTCTCG CACAGGCACACAGAATCCGGTTCGAGTTCCACAAAGGCGGTGCGAGCCACACATACATGAGGATCGACGGGGAGCCCTGGAAGCAACCTTTGCCAGTCGA AGGCGATGACCCTGTGGTGGTGGAGATCTCTCACTTAGGACAGGTGAACATCCTAGCCACGAACGATCGCAGATCGAAGAGCGTGAACGACCCCTCGACC CCGAGCCACGCAAGCCAGCACAGGCGCCACGAAGAGGATGGTGATAGCGGGGAGGATGATGATTCGGTACTAGGGGAAGAGTTCAGGAAGTTCGGTGCGG CTGATACGTTCAAGTTGCCAGAGGAGTTTAACGTCGAGTTGCCAGAGGAGTTTGACGTTTCTCATCTTAGTTAG
AA sequence Show only first row Show all	>Lus10031612 pacid=23155979 polypeptide=Lus10031612 locus=Lus10031612.g ID=Lus10031612.BGIv1.0 annot-version=v1.0 MGNHAPPPPAAVAEEGREGEDGGCRSSRRKPGRPCFRLRKMEAMDSNEEANFLKDFYIPTYVVAPESEAGSVVPVVAPESEAGSVVPKEPKCPVLVFINS KSGGQLGRHLLLTYRSVLNEHQVFDLGEETPDKVLRKIYLNIERLKCGRDKLAATIQERLKIIVAGGDGTAGWLLGVVCDLKFPHPPPIVTVPLGTGNNL PFAFGWGRKNPGTDRQSVVSFLKEVTKAKEMKIDNWHILMRMKTPKEGSCDPIAPLELPHSLHAVHRVSSSDELNKEGCTTFRGGFWNYFSLGMDAQVSF AFHSERKRHPEKFKNQLVNQSTYAKLVGTQGWFCPSVFQSDSRIASLLKVKVMRRLGHWEDLTIPNGIRSIVCLNLPSFSGGLNPWGTPSSWKSRDRQLT RPYVDDGRIEVVGFRDAWHGLVLLAPKGHGTRLAQAHRIRFEFHKGGASHTYMRIDGEPWKQPLPVEGDDPVVVEISHLGQVNILATNDRRSKSVNDPST PSHASQHRRHEEDGDSGEDDDSVLGEEFRKFGAADTFKLPEEFNVELPEEFDVSHLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10031612 [exp]	0	1
AT5G41350			RING/U-box superfamily protein...		Lus10032270 [exp]	4.1	0.9340
AT2G20630		PIA1	PP2C induced by AVRRPM1 (.1.2)		Lus10032673 [exp]	4.9	0.9328
AT1G76360			Protein kinase superfamily pro...		Lus10013223 [exp]	5.5	0.9164
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003149 [exp]	8.1	0.9309
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	9.2	0.9092
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10013462 [exp]	10.8	0.9187
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025220 [exp]	11.2	0.9107
AT4G10300			RmlC-like cupins superfamily p...		Lus10035660 [exp]	13.4	0.9172
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Lus10001648 [exp]	15.2	0.8978
					Lus10021100 [exp]	19.0	0.8928

Compare expression of checked genes

Lus10031612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.