Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12470 1596 / 0 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033725 [exp] 1792 / 0 AT1G12470 1631 / 0.0 zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G147600 [exp] 1675 / 0 AT1G12470 1736 / 0.0 zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05131 [flax] [poplar] Pep3_Vps18 Pep3/Vps18/deep orange family CL0020 [flax] [poplar] TPR PF00637 [flax] [poplar] Clathrin Region in Clathrin and VPS
Representative CDS sequence Show only first row Show all	>Lus10031618 pacid=23156012 polypeptide=Lus10031618 locus=Lus10031618.g ID=Lus10031618.BGIv1.0 annot-version=v1.0 ATGGATCAGGGGAGGCAGGTGTTCACCGTAGATCTTCTGGAGAGGTATGCGACGAAAGGTCGTGGGGTGATCACTGCCATGGCTGCCGGAAACGACGTGA TTGTGCTGGGAACTAGCAAAGGATGGGTTGTCCGTCACGATTTCGGCGTGGGTGATTCTTACGACATTGACCTCTCCGCTGGGGGTAGCATAGACATTGA CCTCCCCGCTGGGAGCCCTGGGGAGCAGTCGATACACAGAGTGTTTGTTGATCCTGGAGGGAGTCATTGCATTGCTACCGTTGTTGGTACTGGCGGGGCT GAGACTTACTACACTCATGCAAAGTGGAGCAAGCCTCGTGTGCTGAGTAGACTAAAAGGCCTTGTTGTGAATGCTGTTGCTTGGAATAGGCAGCAGATCA CAGAAGGGAAAAATTTATGCGTTCCTCATACGGNACTATTTGAAATGGCTGTTGATGAGAAGGATAAGAGGGAGAAGTACTTAAAGTTCATATATGAATT GAAAGAACTTCCTGAAGCTTTTATGGGCTTGCAGATGGAGACGGCTAATTTAGGAAGTGGAACCAGATATTATGTGATGGCTGTTACCCCTACGAGGCTG TATTCGTACACTGGGATTGGGTCTTTGGAAACTGTTTTTGCTAGTTATGTGGAGCGTGCTGTTCATTTTATGGAATTACCTGGAGAAGTACCAAACAGTT ATCCAAATGGTGATGAAAATTTTGTTGAGAACAAGGCGCTTCTGAGTTACTCGAAACTCAGTGAAGGTTCTGAAGTTGTTATACCAACATCGCTTGCTGG TTCTGAATTTCATTTCTTACTTCTTATTGGAAATAAAGTTAAGGTTGTGAACAGGATAAGTGAGCATATTGTGGAGGAACTCCATTTTGATCTGGCACCA GAATCTGTTTCACGTGGTATTATTGGGCTATGTAGTGATGCCACTGCTGGCTTGTTCTATGCATATGACCAGAATTCTGTCTTCCAGGTGTCTGTCAATG ATGAAGGCAGGGATATGTGGAAGGTGTATCTTAACATGAAAGAATTCGCTGCAGCTTTAGCGAATTGTCGTGATCCATTTCAGAGGGATCAAGTATATTT GGTCCAGGCAGATGCTGCATTTTCCTTGAAGGATTTTCAAAGAGCGGCATCATTCTATGCGAAAATTAATTATATACTATCTTTTGAGGAAGTCACTCTC AAGTTTATCAGTGTAGGCGAACAGGATGCTCTAAGGACTTTCTTGTTGCATAGGCTAGATAATCTTACAAAAGATGATAAGTGCCAAATAACAATGATCT CCACATGGGCAACTGAGTTGTACTTGGACAAGATAAATCGGATTCTTTTGGAAGAGGACAGTGCAATAGAGAATCATGGTGCTGAGTACAAGTCCATCAT TCAAGAGTTCCGTGCTTTCCTCAGTGATTCTAAGGATGTCCTTGATGAGGCTACAACAATGAAACTTCTAGAGAGCTATGGACGTGTCGAAGAACTGGTA TATTTTGCCAGTCTGAAGGAGCAGCACGAGATTGTAATTCACCACTACATTCAGCAAGGAGAATCAAAGAAAGCTTTGGAAGTACTTCAAAAACCAGCTG TGCCCATAGATCTCCAGTACAAGTTTGCTCCAGATCTCATTGCACTTGATGCATACGAAACAGTGGAGTCTTGGATGGGGACGAAGAACCTGAATCCACG GAAACTGATTCCTGCAATGATGCGCTATTCAAGCGAACCCCATGCAAAGAATGAGACCCATGAGGTCATCAAGTACTTGGAGTTCTGTGTTCATCGTCTG CATAACGAGGATCCTGGAATTCACAATTTGCTTTTATCTCTTTATGCTAAGCAGGAAGATGACAGCGCACTTTTACGGTTCCTACAATGTAAGTTTGGAA AAGGACGAGAAAATGGACCTGATTTCTTCTATGATCCAAAGTATGCCCTCCGCCTGTGTCTGAAGGAGAAGCGAATGCGTGCTTGTGTTCATATCTACAG CATGATGTCCATGCACGAGGAAGCTGTTGCTCTTGCTCTTCAGGTCGATCCTGAGCTTGCTATGGCTGAGGCGGATAAAGTTGAAGACGACGAGGACTTG AGGAAGAAGCTGTGGCTCATGGTTGCTAAGCATGTGATTGAGCAGGAAAAGGGAACTAAGAGGGAGAATATAAGAAAGGCCATTGCATTTCTCAAGGAAA CTGATGGGCTTTTGAAGATCGAGGATATTCTACCCTTCTTTCCAGACTTCGCCCTAATCGACGACTTCAAGGAAGCAATTTGCTCATCATTGGAGGATTA CAACAAGCAAATTGAACAACTGAAGGAGGAGATGAATGATGCTACACATGGTGCGGACAACATAAGGAATGATATCAATGCTCTTGCTCAGAGATATGCT GTCATTGACAAGGACGAAGACTGCGGGGTCTGCAAGAGGAAAATTTTGAATATGGGTATGGACTATCGCCTCTCTCGGGGATACACGTCCGTGGGACCGA TCGCTCCCTTCTACGTATTTCCCTGCGGGCATGCTTTCCATTCAGAATGCTTGATTGCACACGTAACGCGATGCACGACCGAGTCACATGCGGAGCGTAT TCTGGACCTGCAGAAGCAACTAACCTTACTGGGCGATGGAGCTAGAAAGGACCAAAACGGAAGCATGTTCGACGATCCAGTATCAAGCACAACCAATGCA GACAAGCTTCGATCCCAGCTGGATGATGCAGTAGCAGGCGAGTGCCCATTCTGCGGCGAGCTGATGATCCGGGAAATCTCAATGCCGTTCATCCTTACCG AGGAATCGCAGGAGGTGAATTCGTGGACGGTAAAGCCAGGCAACAGCTTGTGA
AA sequence Show only first row Show all	>Lus10031618 pacid=23156012 polypeptide=Lus10031618 locus=Lus10031618.g ID=Lus10031618.BGIv1.0 annot-version=v1.0 MDQGRQVFTVDLLERYATKGRGVITAMAAGNDVIVLGTSKGWVVRHDFGVGDSYDIDLSAGGSIDIDLPAGSPGEQSIHRVFVDPGGSHCIATVVGTGGA ETYYTHAKWSKPRVLSRLKGLVVNAVAWNRQQITEGKNLCVPHTXLFEMAVDEKDKREKYLKFIYELKELPEAFMGLQMETANLGSGTRYYVMAVTPTRL YSYTGIGSLETVFASYVERAVHFMELPGEVPNSYPNGDENFVENKALLSYSKLSEGSEVVIPTSLAGSEFHFLLLIGNKVKVVNRISEHIVEELHFDLAP ESVSRGIIGLCSDATAGLFYAYDQNSVFQVSVNDEGRDMWKVYLNMKEFAAALANCRDPFQRDQVYLVQADAAFSLKDFQRAASFYAKINYILSFEEVTL KFISVGEQDALRTFLLHRLDNLTKDDKCQITMISTWATELYLDKINRILLEEDSAIENHGAEYKSIIQEFRAFLSDSKDVLDEATTMKLLESYGRVEELV YFASLKEQHEIVIHHYIQQGESKKALEVLQKPAVPIDLQYKFAPDLIALDAYETVESWMGTKNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRL HNEDPGIHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPDFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDPELAMAEADKVEDDEDL RKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLEDYNKQIEQLKEEMNDATHGADNIRNDINALAQRYA VIDKDEDCGVCKRKILNMGMDYRLSRGYTSVGPIAPFYVFPCGHAFHSECLIAHVTRCTTESHAERILDLQKQLTLLGDGARKDQNGSMFDDPVSSTTNA DKLRSQLDDAVAGECPFCGELMIREISMPFILTEESQEVNSWTVKPGNSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12470			zinc ion binding (.1)		Lus10031618 [exp]	0	1
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10006952 [exp]	3.7	0.7477
AT5G05450			P-loop containing nucleoside t...		Lus10009838 [exp]	3.9	0.7036
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10029689 [exp]	6.9	0.7305
AT5G46070			Guanylate-binding family prote...		Lus10018638 [exp]	7.1	0.7350
AT4G34660			SH3 domain-containing protein ...		Lus10017501 [exp]	9.7	0.7286
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	9.9	0.7641
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10038698 [exp]	9.9	0.7153
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004562 [exp]	11.3	0.7022
AT4G24820			26S proteasome, regulatory sub...		Lus10014789 [exp]	12.6	0.7159
AT5G40740			unknown protein		Lus10014617 [exp]	14.5	0.7243

Compare expression of checked genes

Lus10031618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.