Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28230 164 / 3e-46 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033724 [exp] 578 / 0 AT4G28230 210 / 6e-64 unknown protein Lus10039766 [exp] 245 / 2e-77 AT4G28230 234 / 2e-73 unknown protein Lus10018539 [exp] 240 / 3e-75 AT4G28230 232 / 1e-72 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G147500 [exp] 220 / 3e-67 AT4G28230 249 / 2e-78 unknown protein Potri.019G116200 [exp] 218 / 3e-66 AT4G28230 257 / 1e-81 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031619 pacid=23155963 polypeptide=Lus10031619 locus=Lus10031619.g ID=Lus10031619.BGIv1.0 annot-version=v1.0 ATGAGTGTTCTTCACTACCCAGAAGACGCCATGACGACGAATGCGGCGGCGGAGATGCAGATATGGAACAACGCCGCTTTCGACGACGATGAATCGGACA ATTCCACTGCGACGGCGAAGGCGAAAGCTTCCTCATGGTGGTCTCAGTCGGTAAATTCTTCCTCCAAAGAGAACCTGAATCCTGCGATTTTATCTCCCAA GATTTCGATTCGTGATGAGGAGGAAGAAGAAGATGGAGATGGGATCGATTTGAAGATTGAAGAGATCGAGAAGGAGATTCGCCGACTGTCTACTAGACTG AAAGCTTTACGGCTGAAGAAGCAGCTTCACAATGCTGTGGAAAGAAGGGGGAAAGGGGCGGAGGATTCTCGTCTGATGACGCCGTTACCGTCGAGTGGGA AAACGGTGGAGCATCAATGTGCTGCGATGGGGTTTTCGTTGAGTGGGATGAAAACGAAGATTAGTCGGAGAGGGTACAGTTTGGGGCCGGCGGAGATCGC GTCGAAAGCTAGGCTTTTTACCAAGCTGGAGACTGCGGCTGCGGCGATGACGCCGGTTTTATCGACGGCGAGTCGGAGGAAGTCGTGTTTCTGGAAACTG GGGGAAATCGACGAATTGAAAGTGACGAAAGAGAGAGGGAAAAGCCAGAGCGTGAGTCCCAAATCTCGAAACGGAACTGAGATGAAGCCTCTGCCGGTGA AGCAGCTGGCTCAAACGACGGCGGGAGGGAAACGGCCGGTGAAGAAAGAGGAATTAGAAATTCTGGCTCTGATTCAGCCCAAGAATCTGTTCAAAGAGGG AGAGCATTCAATTGCGGACAACAGTAACAAGAACAGGAAGTCGTTGAGGTCGGGGAGAGTCGTGGCGAGCAGGTACAATCCGATTCCGCCAGTGGCGACG ACCGAGGATCGGAAGCGGTCGTTACCGGAGAGCGAGAACGACGACGGGAACAAACGGAGGTCAGCTTCCCGACGTGACGGCGGGTTGAACGTGAAGGTGA AGAAGAAGTGGGAGATTCCAAGTGAAGTGGTGATTTTCAAAGATGAAGATGAAGAAGAAGAAGAAGAAAGGCAAGATGTTTCCGTGGCCAAGATTAGGAC ACACCGGCGGCAGGGTTCGACAGCAGAAACTCCACGGGACTCCGGCGCGGCGAAAAGGGTAGCGGAATTGGTCGGGAAGAAGTCGTTTTTCGCCGTCGAT GACGGTGTCACGGTGGAGGGATCCGTTTGCCTTAGCTTTGAAGAATAG
AA sequence Show only first row Show all	>Lus10031619 pacid=23155963 polypeptide=Lus10031619 locus=Lus10031619.g ID=Lus10031619.BGIv1.0 annot-version=v1.0 MSVLHYPEDAMTTNAAAEMQIWNNAAFDDDESDNSTATAKAKASSWWSQSVNSSSKENLNPAILSPKISIRDEEEEEDGDGIDLKIEEIEKEIRRLSTRL KALRLKKQLHNAVERRGKGAEDSRLMTPLPSSGKTVEHQCAAMGFSLSGMKTKISRRGYSLGPAEIASKARLFTKLETAAAAMTPVLSTASRRKSCFWKL GEIDELKVTKERGKSQSVSPKSRNGTEMKPLPVKQLAQTTAGGKRPVKKEELEILALIQPKNLFKEGEHSIADNSNKNRKSLRSGRVVASRYNPIPPVAT TEDRKRSLPESENDDGNKRRSASRRDGGLNVKVKKKWEIPSEVVIFKDEDEEEEEERQDVSVAKIRTHRRQGSTAETPRDSGAAKRVAELVGKKSFFAVD DGVTVEGSVCLSFEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28230			unknown protein		Lus10031619 [exp]	0	1
AT2G20690			lumazine-binding family protei...		Lus10017000 [exp]	2.2	0.9015
AT5G64090			unknown protein		Lus10020420 [exp]	2.8	0.9163
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10011412 [exp]	3.3	0.9219
AT5G07720			Galactosyl transferase GMA12/M...		Lus10021631 [exp]	6.6	0.9026
AT1G63850			BTB/POZ domain-containing prot...		Lus10017511 [exp]	7.4	0.8873
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	8.1	0.8968
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10027539 [exp]	8.3	0.9085
AT4G39840			unknown protein		Lus10041688 [exp]	9.9	0.8817
AT2G04280			unknown protein		Lus10041091 [exp]	10.8	0.8826
AT2G04280			unknown protein		Lus10036415 [exp]	11.1	0.8565

Compare expression of checked genes

Lus10031619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.