Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74100 182 / 3e-56 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT1G18590 182 / 5e-56 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) AT3G45070 181 / 6e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45080 176 / 9e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G74090 173 / 2e-52 SOT18, ATSOT18, ATST5B ARABIDOPSIS SULFOTRANSFERASE 5B, desulfo-glucosinolate sulfotransferase 18 (.1) AT5G43690 166 / 4e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03760 163 / 4e-49 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT2G03770 162 / 8e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03750 163 / 1e-48 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G26280 160 / 6e-48 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033721 [exp] 417 / 3e-144 AT1G18590 223 / 6e-67 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10033720 [exp] 355 / 1e-123 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10018047 [exp] 313 / 1e-107 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031623 [exp] 311 / 5e-107 AT2G03760 201 / 3e-62 ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) Lus10003070 [exp] 291 / 4e-99 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033718 [exp] 283 / 8e-96 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031624 [exp] 279 / 3e-94 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033716 [exp] 271 / 3e-91 AT3G45070 197 / 7e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033719 [exp] 270 / 1e-90 AT3G45070 196 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G048300 [exp] 197 / 2e-62 AT1G18590 244 / 1e-78 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048200 [exp] 195 / 2e-61 AT1G18590 273 / 7e-90 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048400 [exp] 195 / 3e-61 AT1G18590 248 / 2e-80 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G049100 [exp] 192 / 6e-60 AT1G18590 266 / 3e-87 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048712 [exp] 191 / 7e-60 AT1G18590 265 / 1e-86 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.012G032700 [exp] 187 / 4e-58 AT1G74100 295 / 4e-99 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.003G193300 [exp] 186 / 1e-57 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193400 [exp] 183 / 9e-57 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193200 [exp] 183 / 9e-57 AT5G07010 384 / 1e-133 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.010G138501 [exp] 180 / 1e-55 AT3G45070 351 / 3e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10031621 pacid=23155977 polypeptide=Lus10031621 locus=Lus10031621.g ID=Lus10031621.BGIv1.0 annot-version=v1.0 ATGAACCCTCATCTTTGTGTTCCTTCCTTGGAGGCTGGCATGTATTTGGACGACCACCTATCAAATCGTATTCATTTCGGTCGGCTATTCAACACTCACA TGCCTTACAGCTACCTTCCGGATTCCGTCAAAAGAGACTGCAAACTGGTGTACATCACACGAGACCCAAAGGACACGTTGGTATCCCAATGGCATTTCTT CAACAAAGTATACCGAGACAATCTCGACCCTTTATCATTGGAGCGAGCTGTTGAAATCTTCTGCAGCGGCAGGATTCCTTCAGGTCCGTACTGGGAGCAT GTGTTGGAGTACTGGGAAGCGAGCCAGAGCTCCCCCGACAAAGTGATGTTCACCAAGTACGAGGATCTTCGTCGCGATCCGAAACCGCACGTGCGCAAGC TGGCATCGTTTCTAGGAAAGCCGTTCGATGATGGCGATGATGGAGAAGTTGAGAAGGTTATATGGAGAAGCAGCTTCCACCGGCTTAAGGATTTGGACGT GAATAAAAACGGCAAGTCGTATCCGGAGGTGGCTCCGCTTCTGACGAACAACCTCTTCTTTCGGCGCGGTGAAGTCGGAGACTGGCGGAATCATTTGACG GGCGAGATGGCTAAAAGGATCGATGATGTTACGCGGGAGAAGTTTCGGTGCTGTGGGCTTTACCTTAACGACGAAGAGGCGGTTTGTACCACATAA
AA sequence Show only first row Show all	>Lus10031621 pacid=23155977 polypeptide=Lus10031621 locus=Lus10031621.g ID=Lus10031621.BGIv1.0 annot-version=v1.0 MNPHLCVPSLEAGMYLDDHLSNRIHFGRLFNTHMPYSYLPDSVKRDCKLVYITRDPKDTLVSQWHFFNKVYRDNLDPLSLERAVEIFCSGRIPSGPYWEH VLEYWEASQSSPDKVMFTKYEDLRRDPKPHVRKLASFLGKPFDDGDDGEVEKVIWRSSFHRLKDLDVNKNGKSYPEVAPLLTNNLFFRRGEVGDWRNHLT GEMAKRIDDVTREKFRCCGLYLNDEEAVCTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10031621 [exp]	0	1
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10022904 [exp]	3.2	0.9344
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	3.5	0.9584
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	7.2	0.9507
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	9.2	0.9501
AT5G03330			Cysteine proteinases superfami...		Lus10026525 [exp]	15.0	0.9326
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10038940 [exp]	15.3	0.9394
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10028625 [exp]	16.2	0.9346
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	16.3	0.9361
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10040365 [exp]	16.7	0.9243
AT3G22260			Cysteine proteinases superfami...		Lus10003816 [exp]	16.9	0.9337

Compare expression of checked genes

Lus10031621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.