Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13930 503 / 7e-179 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT4G34850 263 / 1e-84 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT4G00040 261 / 6e-84 Chalcone and stilbene synthase family protein (.1) AT1G02050 243 / 1e-76 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033717 [exp] 763 / 0 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10023670 [exp] 533 / 0 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 474 / 1e-167 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10041508 [exp] 332 / 2e-112 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011745 [exp] 320 / 2e-109 AT5G13930 389 / 6e-137 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10026286 [exp] 271 / 7e-88 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10042388 [exp] 262 / 2e-84 AT4G34850 636 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10039904 [exp] 257 / 5e-82 AT1G02050 577 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10002187 [exp] 252 / 3e-80 AT1G02050 576 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G051500 [exp] 542 / 0 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 538 / 0 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 536 / 0 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 536 / 0 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 525 / 0 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G145100 [exp] 516 / 0 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G028600 [exp] 441 / 1e-154 AT5G13930 510 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.012G138800 [exp] 439 / 8e-154 AT5G13930 531 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.005G175200 [exp] 327 / 8e-111 AT5G13930 425 / 2e-149 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.009G128800 [exp] 262 / 4e-84 AT4G34850 631 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02797 [flax] [poplar] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain CL0046 [flax] [poplar] Thiolase PF00195 [flax] [poplar] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031622 pacid=23155795 polypeptide=Lus10031622 locus=Lus10031622.g ID=Lus10031622.BGIv1.0 annot-version=v1.0 ATGGGCACGATGATCGTCGATCAATTCCGGAAAGAACAGAGGTCGGACGGAGTTGCGACGATATTGGCCATCGGTACCGGAACTCCACCGTTCTGCATTG AACAGAGCAGTTTTCCTGACTACTACTTCCGCATTACCAACATGGAACACAACACTCAGCTTAAAGACAAGTTCAAACGCCTCTGTGAAAGGTCCAACAT TGAGAAGCGTTACTTTCACCTGACTGAACAATTATTGAAAGAAAATCCAGATTTTTCATCATACACAGAACCAACATTCAATGCTCGTCAAGATATGGTC CTGGAGGAAGTCCCAAAGCTAGCCCAAGAAGTTGCCACAAAGGCCATAAAAGAATGGGCCCAGCCCAAATCCAAAATCACCCACGTAATATTCTGCACAA GTACCGGAGTGGACATGCCCGGAGCCGACTACCAACTCACCAAGCTCTTGGGCCTCGAATCGTCCGTAAACCGGACCATGATGTACCACCAGGGCTGCTA TGCCGGTGGCGCGGCCCTCCGCCTGGCCAAGGACCTGGCCGAGAACAATCGAGGCGCTCGAGTTCTCGTAGTCTGCTGCGAGATCACCACAATCGCATTT CGCGGGCCCAGCGACGACGACTTCGCGACCCTCGTGTGTCACGCGTTGTTCGGGGACGGTGCGGGTGCGGTGATTGTGGGGGCGGACCCGGTACCGGATG CAGAGAGGCCGTTGTTCGAGCTGATCCGCGGGGCCCAGACTATCGTACCGGATTCGGAAGGGGCGATCGTGGGGAACAGCCGCGACGTCGGGATGACTTA TAAACTGAGAAGGGATGTGCCTAGCCTTGTTGGTGACAACATTGAGAAGTGTCTTGTTGATGCATTTGAGCCATTGGGGGATATTGTTGGTGATCGTGAT TGGAACTCTTTGTTTTGGGTGGCCCACCCTGGTGGGCCTGCCATACTGGCTAAAGTGGAAGAGAAGTTAAGGCTCCAGCCCGGGAAGCTACGGGCTTCGA GGCGGGTTATGGCCCAGTATGGGAACATGTGGAGTGGGACTGTGTTGTTTGTGTTGGATGAGATGAGGAACAAGTCTGCTGGAGATGGGCTGAGTACTAC TGGAGAAGGGCTTGAATGGGGCGTGCTTCTGGCTTTTGGGCCTGGTTTGACCGTCGAGACTTTGATTCTTCGTAGTTGTGTAGCTGGAATCTAA
AA sequence Show only first row Show all	>Lus10031622 pacid=23155795 polypeptide=Lus10031622 locus=Lus10031622.g ID=Lus10031622.BGIv1.0 annot-version=v1.0 MGTMIVDQFRKEQRSDGVATILAIGTGTPPFCIEQSSFPDYYFRITNMEHNTQLKDKFKRLCERSNIEKRYFHLTEQLLKENPDFSSYTEPTFNARQDMV LEEVPKLAQEVATKAIKEWAQPKSKITHVIFCTSTGVDMPGADYQLTKLLGLESSVNRTMMYHQGCYAGGAALRLAKDLAENNRGARVLVVCCEITTIAF RGPSDDDFATLVCHALFGDGAGAVIVGADPVPDAERPLFELIRGAQTIVPDSEGAIVGNSRDVGMTYKLRRDVPSLVGDNIEKCLVDAFEPLGDIVGDRD WNSLFWVAHPGGPAILAKVEEKLRLQPGKLRASRRVMAQYGNMWSGTVLFVLDEMRNKSAGDGLSTTGEGLEWGVLLAFGPGLTVETLILRSCVAGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10031622 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008918 [exp]	1.0	0.9707
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10003371 [exp]	3.2	0.9615
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	4.5	0.9565
					Lus10024932 [exp]	6.8	0.9259
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10024306 [exp]	10.0	0.9367
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10012946 [exp]	12.1	0.9568
AT1G18500		MAML-4, IPMS1	ISOPROPYLMALATE SYNTHASE 1, me...		Lus10019574 [exp]	14.1	0.9489
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10008168 [exp]	15.0	0.9455
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10031188 [exp]	15.3	0.9374
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022372 [exp]	16.4	0.9127

Compare expression of checked genes

Lus10031622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.