Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45070 196 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03760 194 / 1e-59 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT1G74100 193 / 4e-59 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT5G07010 191 / 5e-58 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT1G13420 189 / 2e-57 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT3G45080 184 / 7e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G43690 184 / 2e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G28170 183 / 3e-55 SOT7 sulphotransferase 7 (.1) AT5G07000 182 / 7e-55 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1) AT1G18590 181 / 2e-54 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033721 [exp] 402 / 2e-136 AT1G18590 223 / 6e-67 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10033720 [exp] 380 / 4e-132 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10018047 [exp] 369 / 1e-127 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10003070 [exp] 367 / 5e-127 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033718 [exp] 362 / 3e-125 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10034079 [exp] 346 / 3e-119 AT3G45070 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031624 [exp] 346 / 5e-119 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033716 [exp] 325 / 2e-110 AT3G45070 197 / 7e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033719 [exp] 317 / 3e-107 AT3G45070 196 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G032700 [exp] 230 / 1e-73 AT1G74100 295 / 4e-99 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.011G048200 [exp] 219 / 3e-69 AT1G18590 273 / 7e-90 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048400 [exp] 218 / 7e-69 AT1G18590 248 / 2e-80 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048300 [exp] 216 / 6e-68 AT1G18590 244 / 1e-78 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048712 [exp] 213 / 6e-67 AT1G18590 265 / 1e-86 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G049100 [exp] 213 / 1e-66 AT1G18590 266 / 3e-87 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048100 [exp] 209 / 2e-65 AT1G74100 251 / 1e-81 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.004G031400 [exp] 209 / 3e-65 AT1G13420 248 / 2e-80 ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) Potri.003G193400 [exp] 206 / 2e-64 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193300 [exp] 203 / 4e-63 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10031623 pacid=23155983 polypeptide=Lus10031623 locus=Lus10031623.g ID=Lus10031623.BGIv1.0 annot-version=v1.0 ATGATGAATACTTCAACAGAAGAAGTTCTTATGTACTGGGATGCAGAGCTATCCGAGGTGGATGGGTTCTGGTACCACACAAGCATCAAGGGCTCCATGG AAGCTTTCAGAGCAAACTTCCAACCCAAGGGTGAAGACGTGGTCATACTGGCTTCGAGCCCGAAAACCGGAACGACTTGGCTCAAGGCTCTGGCTCACAG CATCCTCTTCCGAGGCGGAGAAGACGACCTTCTGACCAAGATGAATCCTCATGTTTGTGTTCCTTCCTTGGAGAGCATCGTCTACCACCACGACCCATCA AGTCCTCCTGTTGACCCCGATCAGTTTCCGCTCTTGAACACTCATATGGCCTACAGCTACCTTCCGAACTCCGTAAAACGCAACCCTGGAGGGTGCAAGA TCGTCTACATAGCACGAAACCCAAAGGACACGATGGTATCCCAATGGCATTTCTTCAACAAAATATTCGGACGCAGTGAAGACCCAATGCCGCTAAAGAG AGCCGCGGAGATCTTCTGCAGCGGCGTAATGCCCTTCGGACCGTTCTACGAGCACGTTCTCGAGTACTGGGAGGCAAGCAAGAGGTCTCCCGACAAAGTG ATGTTCATCAAGTACGAGGATCTTCGTGGTCCAGACACTAAGATCCACGTGAGGAAACTCGCCTCGTTTCTCTCAAGGCCCTTCGGGGATGGTACTGAGG GAGAAGGAGAAGTTGACAAGGTTATATGGAGGAGTAGCTTTGACCGGCTGAAGGAGTTGGATGTGAATAAGAACGGGAAGCCGTATCCTCAGTTATTGCC GCATTTGACTAACAACTTATTTTTCCGACGTGGGGAAGTTGGAGACTGGCGGAACCATTTGACCGCTGATGTGGCGAAATATATCGATGATTTTACGGAG GTGAAGTTTCGAGGTACTGGGCTTTACCTTGATGAAGATCGGGAAGAACAGGCGGTATGCATTTTGTTAGAACCTCTGGTTCCGTCGCAATAA
AA sequence Show only first row Show all	>Lus10031623 pacid=23155983 polypeptide=Lus10031623 locus=Lus10031623.g ID=Lus10031623.BGIv1.0 annot-version=v1.0 MMNTSTEEVLMYWDAELSEVDGFWYHTSIKGSMEAFRANFQPKGEDVVILASSPKTGTTWLKALAHSILFRGGEDDLLTKMNPHVCVPSLESIVYHHDPS SPPVDPDQFPLLNTHMAYSYLPNSVKRNPGGCKIVYIARNPKDTMVSQWHFFNKIFGRSEDPMPLKRAAEIFCSGVMPFGPFYEHVLEYWEASKRSPDKV MFIKYEDLRGPDTKIHVRKLASFLSRPFGDGTEGEGEVDKVIWRSSFDRLKELDVNKNGKPYPQLLPHLTNNLFFRRGEVGDWRNHLTADVAKYIDDFTE VKFRGTGLYLDEDREEQAVCILLEPLVPSQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10031623 [exp]	0	1
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10008097 [exp]	1.4	0.9539
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10016249 [exp]	1.4	0.9575
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Lus10000857 [exp]	2.6	0.9432
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10041863 [exp]	3.0	0.9422
AT5G59070			UDP-Glycosyltransferase superf...		Lus10016475 [exp]	3.3	0.9408
AT1G72230			Cupredoxin superfamily protein...		Lus10027043 [exp]	3.5	0.9530
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10002663 [exp]	4.0	0.9463
AT1G54650			Methyltransferase family prote...		Lus10006576 [exp]	4.5	0.9451
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10013352 [exp]	5.5	0.9210
AT3G10120			unknown protein		Lus10027167 [exp]	7.1	0.9418

Compare expression of checked genes

Lus10031623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.