Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45070 200 / 5e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03760 196 / 2e-60 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT1G74090 196 / 4e-60 SOT18, ATSOT18, ATST5B ARABIDOPSIS SULFOTRANSFERASE 5B, desulfo-glucosinolate sulfotransferase 18 (.1) AT1G18590 195 / 8e-60 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) AT5G07010 195 / 1e-59 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT1G74100 194 / 3e-59 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT5G07000 193 / 7e-59 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1) AT2G03770 191 / 3e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G13420 191 / 3e-58 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT3G45080 187 / 5e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033716 [exp] 483 / 8e-173 AT3G45070 197 / 7e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003070 [exp] 398 / 2e-139 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033719 [exp] 379 / 9e-132 AT3G45070 196 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033720 [exp] 375 / 3e-130 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033718 [exp] 372 / 5e-129 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031623 [exp] 358 / 9e-124 AT2G03760 201 / 3e-62 ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) Lus10018047 [exp] 358 / 1e-123 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10034079 [exp] 346 / 2e-119 AT3G45070 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033721 [exp] 358 / 3e-119 AT1G18590 223 / 6e-67 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G193300 [exp] 225 / 2e-71 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193400 [exp] 223 / 1e-70 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.011G048300 [exp] 217 / 3e-68 AT1G18590 244 / 1e-78 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.003G193500 [exp] 213 / 8e-67 AT5G07010 446 / 1e-157 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193250 [exp] 211 / 5e-66 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193200 [exp] 210 / 8e-66 AT5G07010 384 / 1e-133 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.011G048200 [exp] 209 / 2e-65 AT1G18590 273 / 7e-90 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048712 [exp] 209 / 2e-65 AT1G18590 265 / 1e-86 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.012G032700 [exp] 207 / 2e-64 AT1G74100 295 / 4e-99 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.010G138501 [exp] 206 / 5e-64 AT3G45070 351 / 3e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10031624 pacid=23156032 polypeptide=Lus10031624 locus=Lus10031624.g ID=Lus10031624.BGIv1.0 annot-version=v1.0 ATGATCGGTAGTTCATCGTCAAAAGAGCTCGATCAAGATCCGGAAAAGGGTCAAGTAGCTGCAGCGACAATAACAATGTTCTGGAATGCTGTGGAGATGT TCGAGTCGAAAGGCTTCTGGCACGGAGCCCGTACCGTGGACCCCATCAAAGCCTTCAGAGAAAACTATCAGCCAGCACGAGATGATGTCATCGTGTTGGC TAGCATGCCGAAAGCCGGGACCACATGGCTCAAGTCTCTGTCCCACTGCATCCTCTTCCGAGATGTAGAAGAAGAAGACGACATTCTCACCAACACGAAT CCCCATAACTGTGTCCCAACCTTAGAGTCTACGGTGTACTCGGGCCATCCGTCCACGTTTCCTCCTATCGATCCGGAGCGTCGGCTGTTCCACACTCATA TTAACTACAGCAACCTACCGGATTCGATAACAAAAGGCTCCCGCGGATGCAAAATGGTATACGTGGCACGAGATCCGAAGGACACGTTGGTGTCGATGTG GCATTTCTACAACAAAATAATCAGACCGTTCCCATTGGAAGAAGCCGTGGAGAGCTTCTGTTGTGGCTTGGTGCCTTACGGGCCATTCTACCAACACATG TTGGAGTACTGGCAAGAAAGCAAGAGATCTCCCGACAGGGTGATGTTCGTCAAGTACGAGGATCTCCATCGCGACCCGAAACCGCACGTGCGCAAGCTGG CCTCGTTTCTAGGAAGGCCTTTCGGTGAAGAAGAAGAAGAAGAAGTTGACAAGGTTATATGGAGGAGCAGCTTCGACAGAGTTAAGGATTTGGAAGTTAA TAAGAATGACATTCAACGGCCTTTCGGGTTGTTGGCTCCACTTTTGAAGAATAGTTACTTCTTTCGGCGCGGAGAAGTTGGAGACTGGAGAAATCATTTA ACCGCGGAGATGGCTGAGCGTATCGATAATGTTACTAGGATGAAGTTACAGGGTACTGGGCTTTATCTCGAGGACGGGGAGGCGGCGGCCACTGTTTGA
AA sequence Show only first row Show all	>Lus10031624 pacid=23156032 polypeptide=Lus10031624 locus=Lus10031624.g ID=Lus10031624.BGIv1.0 annot-version=v1.0 MIGSSSSKELDQDPEKGQVAAATITMFWNAVEMFESKGFWHGARTVDPIKAFRENYQPARDDVIVLASMPKAGTTWLKSLSHCILFRDVEEEDDILTNTN PHNCVPTLESTVYSGHPSTFPPIDPERRLFHTHINYSNLPDSITKGSRGCKMVYVARDPKDTLVSMWHFYNKIIRPFPLEEAVESFCCGLVPYGPFYQHM LEYWQESKRSPDRVMFVKYEDLHRDPKPHVRKLASFLGRPFGEEEEEEVDKVIWRSSFDRVKDLEVNKNDIQRPFGLLAPLLKNSYFFRRGEVGDWRNHL TAEMAERIDNVTRMKLQGTGLYLEDGEAAATV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45070			P-loop containing nucleoside t...		Lus10031624 [exp]	0	1
AT4G11290			Peroxidase superfamily protein...		Lus10027163 [exp]	2.2	0.9229
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10023890 [exp]	10.2	0.8471
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	11.0	0.9098
AT1G50060			CAP (Cysteine-rich secretory p...		Lus10025697 [exp]	12.0	0.8840
AT5G51310			2-oxoglutarate (2OG) and Fe(II...		Lus10009025 [exp]	12.6	0.8758
					Lus10014263 [exp]	14.3	0.8724
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	16.4	0.8995
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10023211 [exp]	17.5	0.8740
AT3G07620			Exostosin family protein (.1)		Lus10008751 [exp]	21.6	0.8796
AT4G33590			unknown protein		Lus10041131 [exp]	22.1	0.9046

Compare expression of checked genes

Lus10031624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.