Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03340 627 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G03520 626 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G27480 443 / 4e-154 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G39990 444 / 5e-154 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G15050 434 / 2e-150 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G15350 415 / 5e-143 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G53100 402 / 6e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 395 / 6e-136 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G37585 360 / 6e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 337 / 5e-113 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033714 [exp] 818 / 0 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 448 / 9e-156 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 446 / 4e-155 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 437 / 1e-151 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030084 [exp] 437 / 3e-151 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 419 / 2e-144 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 418 / 3e-144 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10020316 [exp] 389 / 7e-133 AT3G03690 457 / 1e-160 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025339 [exp] 381 / 7e-130 AT2G37585 483 / 6e-171 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G145500 [exp] 672 / 0 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 652 / 0 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 446 / 5e-155 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 445 / 1e-154 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G399500 [exp] 436 / 3e-151 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.011G119600 [exp] 432 / 1e-149 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.013G066200 [exp] 415 / 1e-143 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.009G003300 [exp] 413 / 5e-142 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 405 / 1e-138 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 353 / 3e-119 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10031626 pacid=23155904 polypeptide=Lus10031626 locus=Lus10031626.g ID=Lus10031626.BGIv1.0 annot-version=v1.0 ATGAGAAAGCATGCCAATTTTTCCCACTCAGGAAGGGTGTTTAGTGATAGGAAATGGATTGTCCCTTTCTTTGCAAGCTTGCTAGTCTCTCTAACCTTGT TTCTATGGAGTGCTTTCGGGCTGTTCTCGTCGTCGTCCCTTAATGGAGGGGACGTCGAGTTGCCATTCGAGGAGGTAATATCTTTTTCGAGATCAGAGGG TTCGAGTGGTGGCTACTTTGTGGAATCCAAATTTAGAAAGAGGTTGAATGCTAGTGAAGGTTCGGAGTTCGAAGCTCCTAAGCTGGCTTATCTCGTTTCG GGGACTAAAGGAGACAGTCGTAGAATGTTGAGGACTTTGCAAGCTGTGTACCATCCGAGAAACCAGTACATCTTGCACTTGGATCTCGAGGCTCCTCCTC GCGAAAGGCTGGAGTTGGCATTGTATGTGAAGAGTGATCCGACTTTCGCTGAAGTTGGCAATGTTCGTGTGATGGCTCAGTCGAATTTGGTTACCTATAA AGGGCCTACCATGATTGCTTGCACCCTACAAGCTATTGCCATTATGTTGAGGGAGAGCTTGGACTGGGATTGGTTTATCAATCTCAGCGCTTCCGATTAT CCCCTCGTTACGCAAGATGATTTTCTGTACGTGTTCTCCAACGTGTCGCGGAATTTCAACTTCATTGAGAACATGCAGCTGACTGGCTGGAAGTTGAACC AAAGAGGAAAATCGATAATTGTTGATCCAGGATTGTACTTGTCAAAAAAATCCGAAGTTGCGTTCACCACTCAGCGACGAACCCTTCCTACTTCGTTCAA GTTGTTTACAGGTTCAGCATGGGTGATGCTCACAAGATCCTTCGCCGAATACTGCATAATGGGTTGGGAGAATCTCCCACGGACCATGCTTATGTACTAC ACAAACTTCGTCTCCTCCCCGGAAGGTTACTTCCACACAATCATATGCAACGACAATGAATACCGAAGCACAGCGATCGGCCACGACCTTCATTACATCG CTTGGGATACTCCGCCGAAGCAGCACCCTGTATCCTTGACGATTAAAGACTTTGACAAGATGGTCAAAAGCAACGCACCATTCGCTCGTAAGTTTGCAAA GAACGATCCCGTCTTGGATAAGATCGATAAAGAGCTCCTCGGCCGGACAGGCAGGTTTGCTCCTGGAGCCTGGTGCATTGGTGGGTTGGATAATGTATCG GATCCATGCTCGGTGCGTGGTGATGACTCGGTTTTTCGGCCTGGTCCTGGTGCGAGGAGATTGCGGGAACTGCTCGAGATGTTGTTGTCTGACGAGTCGC GGAAGAAGCAGTGTTGA
AA sequence Show only first row Show all	>Lus10031626 pacid=23155904 polypeptide=Lus10031626 locus=Lus10031626.g ID=Lus10031626.BGIv1.0 annot-version=v1.0 MRKHANFSHSGRVFSDRKWIVPFFASLLVSLTLFLWSAFGLFSSSSLNGGDVELPFEEVISFSRSEGSSGGYFVESKFRKRLNASEGSEFEAPKLAYLVS GTKGDSRRMLRTLQAVYHPRNQYILHLDLEAPPRERLELALYVKSDPTFAEVGNVRVMAQSNLVTYKGPTMIACTLQAIAIMLRESLDWDWFINLSASDY PLVTQDDFLYVFSNVSRNFNFIENMQLTGWKLNQRGKSIIVDPGLYLSKKSEVAFTTQRRTLPTSFKLFTGSAWVMLTRSFAEYCIMGWENLPRTMLMYY TNFVSSPEGYFHTIICNDNEYRSTAIGHDLHYIAWDTPPKQHPVSLTIKDFDKMVKSNAPFARKFAKNDPVLDKIDKELLGRTGRFAPGAWCIGGLDNVS DPCSVRGDDSVFRPGPGARRLRELLEMLLSDESRKKQC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10031626 [exp]	0	1
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10031976 [exp]	1.7	0.8003
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	5.3	0.8289
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10027139 [exp]	5.8	0.8118
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10033386 [exp]	5.9	0.7917
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10031419 [exp]	8.5	0.7934
AT5G09890			Protein kinase family protein ...		Lus10005707 [exp]	11.0	0.7807
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10041716 [exp]	11.0	0.7590
AT4G17250			unknown protein		Lus10004355 [exp]	14.1	0.7416
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10014176 [exp]	15.0	0.7813
AT5G22850			Eukaryotic aspartyl protease f...		Lus10021397 [exp]	19.0	0.7649

Compare expression of checked genes

Lus10031626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.