Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20840 331 / 4e-114 Secretory carrier membrane protein (SCAMP) family protein (.1) AT1G03550 323 / 6e-111 Secretory carrier membrane protein (SCAMP) family protein (.1) AT1G61250 319 / 3e-109 SC3 secretory carrier 3 (.1.2) AT1G11180 298 / 6e-101 Secretory carrier membrane protein (SCAMP) family protein (.1), Secretory carrier membrane protein (SCAMP) family protein (.2) AT1G32050 263 / 1e-87 SCAMP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033712 [exp] 502 / 0 AT2G20840 416 / 1e-147 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10039794 [exp] 445 / 2e-158 AT2G20840 427 / 1e-151 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10018562 [exp] 423 / 6e-150 AT2G20840 429 / 1e-152 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10018455 [exp] 314 / 2e-107 AT1G61250 440 / 2e-157 secretory carrier 3 (.1.2) Lus10038302 [exp] 313 / 6e-107 AT1G61250 442 / 3e-158 secretory carrier 3 (.1.2) Lus10011229 [exp] 305 / 1e-103 AT1G61250 436 / 1e-155 secretory carrier 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G144700 [exp] 369 / 2e-128 AT2G20840 438 / 1e-156 Secretory carrier membrane protein (SCAMP) family protein (.1) Potri.019G104000 [exp] 368 / 4e-128 AT2G20840 426 / 2e-151 Secretory carrier membrane protein (SCAMP) family protein (.1) Potri.011G045100 [exp] 341 / 1e-117 AT1G61250 397 / 4e-140 secretory carrier 3 (.1.2) Potri.004G036600 [exp] 333 / 1e-114 AT1G61250 357 / 3e-124 secretory carrier 3 (.1.2) Potri.001G134100 [exp] 270 / 4e-90 AT1G32050 399 / 8e-142 SCAMP family protein (.1) Potri.003G099300 [exp] 269 / 7e-90 AT1G32050 393 / 2e-139 SCAMP family protein (.1) Potri.004G036700 [exp] 167 / 6e-51 AT1G61250 158 / 3e-48 secretory carrier 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04144 [flax] [poplar] SCAMP SCAMP family
Representative CDS sequence Show only first row Show all	>Lus10031627 pacid=23155993 polypeptide=Lus10031627 locus=Lus10031627.g ID=Lus10031627.BGIv1.0 annot-version=v1.0 ATGAGTCGCTACGATTCCAACCCCTTTGAAGAAGAAGACGTCAATCCTTTTGCGGATCAAGCGAAGGGAAGATCATCTGGGAAATCAAACTTCGGTGGAG GAGGCGCCTTCTACATGCCGTGGGACAATGCACGTTGCATTCGTATTCGCTATGATAGGGATTCATCCTTGCAGAATCCAGGAGTTGCCCCTGCATCTTC GAGACTTGCACCTCTTGCCCCGGAGCCCTACGATCGTAGTGCCACAGTTGATATTCCGTTGGATAATGCAAAAGATCATCTTAAAGCCAAGGAGATGGAG CTTCAAGCTAAAGAGGCTGAATTGAAGAAGAGGGAACAGGAATTAAAACGAAAAGAAGATGCAATAAAACGAGCTGGAATTGTGATTGAAGAGAACAACT TTCCACCATTTTCCCCTCTAATCCATCACGATATTCCAAATGAGATACCGATCCATCTACAGAAGATACAATACGTTGCTTTCACGACTTTGTTAGGCAT CGTATTGTGTCTTCTGTGGAATGTTGTTGCAGTTACTGCAGCCTGGATTAAAGGAGAAGGTCCAACTATTTTCATTTTCGCTGTTATCTACTTCGTAACT GGGGTTCCCGGAGCCTATGTTTTGTGGTATCGCCCCCTCTACCGTGCAATGAGGACTGATAGTGCTTTGAAATTCGGGTGGTTTTTTCTGTCCTACTCTT TTCATATTGGTTTTTGCGTCTTGGCTGCTATTGCTCCGCCTATTATCTTCAAGGGGAAGTCCCTCGCGGGAGTTTTGCCTGCCATTGATCTTCTTGGCAC CAATGCTCTAGTCGGGGTATTATACTTCATTGGGTTTGGATGTTTTACAGTCGAATCCCTTCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACTTC AGAGGCAGTGGCAAAGCTGCAGAGATGAAACGTCAGGCGATGATGGCTGCACTATGA
AA sequence Show only first row Show all	>Lus10031627 pacid=23155993 polypeptide=Lus10031627 locus=Lus10031627.g ID=Lus10031627.BGIv1.0 annot-version=v1.0 MSRYDSNPFEEEDVNPFADQAKGRSSGKSNFGGGGAFYMPWDNARCIRIRYDRDSSLQNPGVAPASSRLAPLAPEPYDRSATVDIPLDNAKDHLKAKEME LQAKEAELKKREQELKRKEDAIKRAGIVIEENNFPPFSPLIHHDIPNEIPIHLQKIQYVAFTTLLGIVLCLLWNVVAVTAAWIKGEGPTIFIFAVIYFVT GVPGAYVLWYRPLYRAMRTDSALKFGWFFLSYSFHIGFCVLAAIAPPIIFKGKSLAGVLPAIDLLGTNALVGVLYFIGFGCFTVESLLSIWVIQQVYMYF RGSGKAAEMKRQAMMAAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20840			Secretory carrier membrane pro...		Lus10031627 [exp]	0	1
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10029947 [exp]	4.7	0.8663
					Lus10004506 [exp]	8.9	0.7396
AT2G26730			Leucine-rich repeat protein ki...		Lus10032162 [exp]	10.1	0.7237
					Lus10038080 [exp]	13.1	0.8460
					Lus10008289 [exp]	13.3	0.8481
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	17.2	0.8435
					Lus10036765 [exp]	19.2	0.8435
AT2G16190			unknown protein		Lus10011284 [exp]	21.1	0.8435
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10038126 [exp]	22.3	0.8037
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	22.8	0.8435

Compare expression of checked genes

Lus10031627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.