Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03390 520 / 5e-174 SRF3 STRUBBELIG-receptor family 3 (.1) AT2G20850 489 / 5e-162 SRF1 STRUBBELIG-receptor family 1 (.1) AT4G22130 385 / 1e-124 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G11130 367 / 3e-115 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT1G53730 321 / 2e-98 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 315 / 1e-96 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT1G78980 297 / 1e-89 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G13065 265 / 5e-78 SRF4 STRUBBELIG-receptor family 4 (.1) AT3G58690 249 / 5e-75 Protein kinase superfamily protein (.1) AT2G30740 240 / 5e-72 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033711 [exp] 1119 / 0 AT4G03390 825 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10039795 [exp] 630 / 0 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018563 [exp] 582 / 0 AT4G03390 773 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018459 [exp] 392 / 4e-126 AT4G03390 594 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10011223 [exp] 389 / 2e-124 AT4G03390 591 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10015549 [exp] 377 / 2e-117 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10020030 [exp] 355 / 2e-111 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10003926 [exp] 331 / 4e-102 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10037464 [exp] 327 / 2e-101 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103900 [exp] 822 / 0 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.013G144600 [exp] 577 / 0 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 441 / 6e-144 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 433 / 7e-141 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G010500 [exp] 380 / 9e-121 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.004G005301 [exp] 379 / 2e-120 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.001G161600 [exp] 331 / 3e-102 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.003G073700 [exp] 324 / 2e-99 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.007G002600 [exp] 303 / 6e-92 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.014G001200 [exp] 300 / 8e-91 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031628 pacid=23155852 polypeptide=Lus10031628 locus=Lus10031628.g ID=Lus10031628.BGIv1.0 annot-version=v1.0 ATGGGACTTAAGAGATCTGGCTCATCAAGTTGGGAGATCTGTACAAAGTTCCTTTTGGGGTTTGCTTTAATCTGGACAGCTCAAGTTTCACTTGCAGCTA CCAACAACAATGATGTTGCTGCAATTAATAGCTTATATGCTTCACTGGGGAGTCCGGTGTTGCCCGGATGGGTTGCCAGCGCAGGCGACCCGTGTGGGGA AGCTTGGCAAGGGGTTCAGTGTAATGCTTCAGAGATACAGTCCATAGATCTCAATGGGGCTAATCTGGGTGGTGCATTGGGTACTACTTTGGGATCATTT ACTTCCATCAAATCCATTGATCTAAGCAACAACCAGATCGGTGGTACTATTCCGTCCACTCTCCCGCCTACATTGCAGACACTTTCCCTTTCGGGTAATA ATCTCACAGGAAGCATTCCAGATACTCTATCCTCTTTAACTCTCTTGACAGACATATCTCTGAACCAGAACTCGTTGAGTGGAGAGATACCGGACGCTTT CCAATCCCTTACAGGATTGATCAATCTAGACTTGTCAGGCAACAATTTGAGTGGAATGCTTCCTCCTTCTTTCACTAACTTGGTTCAGTTAACGACATTG CATTTACAGGATAACACGTTGTCTGGCACCCTTGATGTTCTTCAAGACCTCCCACTCCAAGATTTGAACATTGAAAATAACCTGTTCTCCGGATCCATAC CCGACAAGATGCTGAGTATTCCAACATTTAACAAAGATGGAAACTCCTTCAACGAGACAATTGCTCCATTACCATCACCATCATCTCCAACAATACTGCC AGCCACACCATTGCCTCCTGGGACACTGATACCACCACCGCCACCAGCGACATCATCAACAACATCACCTTCTTCCGGAAAAACGCCAGGGAAACAGGCA AAGGGGCCATCTTCACAAGAGCAATCATTAAGTGGAAAGAAACCTGTTAAGAAAATAGTTTGGATATCAATTGCTGCGGCAGCGGTGTTTATAATTTTTG TGTTGGCATGCTGCTTGTTCATACCTAAGTGTTGTAGAAGAAGTGAAGAAGGCGCTCGATATTCGAAACGGCATCAAGTTGGCAACAGAGAACAACATCC AAGTGACAATAATAATAATTCCTTACTCCTTCCAACTAGTCAACCACAAGTGAAGCAAGGTAATCATTTGTTAACAGATAAAAAGGAGAGTATGCTCCCT GCAAAGAAAGATCAACCGGTGCCACAAAAGCCACCTGAAAGAAAACTCCCCACTTCAGCAGTAGCAGCAGCAGTACCGAAGAAGGACGACTATGCAATAG ACTTGAGCAGACTAGACTCGATGGATATAATGCATATGCCGCCTCCTCCACCTCCGCCTCCCCCACCGCCTGTCGAGAAGGTCATCGTGAACCCACTCGT GTCTTCTACCGAACCAAGTTCTGCAAAGCCTTCCACAAAAGCTAGGAATGTTGTCACCTCTGCCAGGACTTTCACCATTGCATCTCTTCAGCAATACACA AACAGCTTTTCTCAAGAGAACCTTGTAGGAGGCGGCATGCTGGGAACTGTCTATAGGGCAGAGCGTCTGAATGGAAAGCTTCTGGCAGTCAAGAAACTGG ACAGGAGAGCTTCGACACAGCGTGACGATGAGTTTCTTGATATGGTCAACAACATTGACCGGATTCGACATGCTAATGTTGTTGAGCTCATGGGATACTG TGCTGAGCATGATCAGAGGCTTCTGATTTATGAGTACTGCAGCAATGGTACCTTGCAGGATATGTTACACACGGATGACGAATTGAAGGATAATCTCTCA TGGAACACCCGCATTCGAATGGCACTAGGAGCTGCTAGAGCTTTAGAATATTTGCACGAGGTTTGCCAGCCGCCAGTCATACACAGAAACTTCAAGTCTG CTAATATTCTCCTCGATGATGACCTTGATGTTCGAGTCTCCGATTGTGGATTGGCTCCATTAATATCGTCCGGTTCAGTCAGACAGTTGTCAGGACAGCT CTTAACAGCATATGGGTACGGGGCTCCGGAGTTTGAGTCAGGAATTTACACCACTCAAAGCGATGTCTATAGCTTCGGTGTTGTAATGTTGGAACTTTTG ACTGGCCGGAAATCCTACGACAAGTCACGTAACCGTGGTGAACAGTTTCTTGTGAGGTGGGCGATCCCTCAGCTACATGACATCGATGCAATATCGAGGA TGGTGGATCCTTCTCTCCACGGACAATACATTGCTAAATCACTATCCAACTTTGCTGATATCATTTCTAGATGTGTCCAGTCTGAGCCTGAATTCAGGCC ACAGATGTCCGAGGTTGTTCAGGATCTAACCAACATGATCAGAAGGGAACGTCCCAGCAACGAATCCATCGGAGAATGA
AA sequence Show only first row Show all	>Lus10031628 pacid=23155852 polypeptide=Lus10031628 locus=Lus10031628.g ID=Lus10031628.BGIv1.0 annot-version=v1.0 MGLKRSGSSSWEICTKFLLGFALIWTAQVSLAATNNNDVAAINSLYASLGSPVLPGWVASAGDPCGEAWQGVQCNASEIQSIDLNGANLGGALGTTLGSF TSIKSIDLSNNQIGGTIPSTLPPTLQTLSLSGNNLTGSIPDTLSSLTLLTDISLNQNSLSGEIPDAFQSLTGLINLDLSGNNLSGMLPPSFTNLVQLTTL HLQDNTLSGTLDVLQDLPLQDLNIENNLFSGSIPDKMLSIPTFNKDGNSFNETIAPLPSPSSPTILPATPLPPGTLIPPPPPATSSTTSPSSGKTPGKQA KGPSSQEQSLSGKKPVKKIVWISIAAAAVFIIFVLACCLFIPKCCRRSEEGARYSKRHQVGNREQHPSDNNNNSLLLPTSQPQVKQGNHLLTDKKESMLP AKKDQPVPQKPPERKLPTSAVAAAVPKKDDYAIDLSRLDSMDIMHMPPPPPPPPPPPVEKVIVNPLVSSTEPSSAKPSTKARNVVTSARTFTIASLQQYT NSFSQENLVGGGMLGTVYRAERLNGKLLAVKKLDRRASTQRDDEFLDMVNNIDRIRHANVVELMGYCAEHDQRLLIYEYCSNGTLQDMLHTDDELKDNLS WNTRIRMALGAARALEYLHEVCQPPVIHRNFKSANILLDDDLDVRVSDCGLAPLISSGSVRQLSGQLLTAYGYGAPEFESGIYTTQSDVYSFGVVMLELL TGRKSYDKSRNRGEQFLVRWAIPQLHDIDAISRMVDPSLHGQYIAKSLSNFADIISRCVQSEPEFRPQMSEVVQDLTNMIRRERPSNESIGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10031628 [exp]	0	1
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10014665 [exp]	1.4	0.9353
AT4G20160			unknown protein		Lus10036249 [exp]	5.7	0.9094
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10018774 [exp]	12.0	0.9083
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10035064 [exp]	18.8	0.8783
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10039902 [exp]	19.0	0.9285
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10020121 [exp]	23.6	0.8755
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10004324 [exp]	24.1	0.9280
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10039186 [exp]	29.5	0.9181
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10014356 [exp]	29.7	0.9013
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10042499 [exp]	32.7	0.8781

Compare expression of checked genes

Lus10031628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.