Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71840 472 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 107 / 3e-26 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 101 / 6e-24 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 96 / 3e-21 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G52820 93 / 1e-20 WD-40 repeat family protein / notchless protein, putative (.1) AT2G43770 91 / 4e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT3G16650 91 / 1e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 91 / 1e-19 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT1G61210 88 / 1e-18 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 88 / 2e-18 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033710 [exp] 773 / 0 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10032994 [exp] 626 / 0 AT1G71840 415 / 8e-145 transducin family protein / WD-40 repeat family protein (.1) Lus10014674 [exp] 107 / 6e-26 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 106 / 1e-25 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 101 / 5e-24 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 99 / 4e-23 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 99 / 5e-22 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 97 / 2e-21 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10041007 [exp] 91 / 2e-19 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G087200 [exp] 495 / 8e-176 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.013G116900 [exp] 470 / 9e-166 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 108 / 1e-26 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 107 / 5e-26 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 103 / 9e-25 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 92 / 1e-20 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 93 / 3e-20 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.008G002300 [exp] 93 / 4e-20 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 92 / 5e-20 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.005G144400 [exp] 91 / 1e-19 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10031629 pacid=23155776 polypeptide=Lus10031629 locus=Lus10031629.g ID=Lus10031629.BGIv1.0 annot-version=v1.0 ATGCAGAGGGATGGTGATAGCAGTGATGATGGAGAGGTCTACATCGATGAATCAGATACTCTCCATGAGGTTATCCTGGACGATGAAGATCTTCCTGATG TTAATGATGAGGATGGTGAACAAGCTGGTTATGATGAGGATGATTCCATGCACACTTTCACTGGCCATACATCTGAACTTTACGCAGTTGCCTGCAGTCC AACAGACCCTTTACTGGTAGCAACCGGGGGCGGTGATGACAGAGGATTTTTATGGAAGTTAGGACAAGGAGATTGGGCTGCTGAATTCGGAGGTCATAAG GATTCCGTTACTAGCTTAGCATTTAGTAGCGATGGACAGTTTCTAGCATCCGCGGGACTTGATTCTGTAGTTAATGTTTGGGATGTATCTGGAAATCTTA AATGTATGCTTGAAGGCCCTGTTGTGGTTGAGCAGACAGAGGAAGAAGCCGGTCCTTCTGCTGGCTTTGAGTGGGTCAAGTGGCATCCTAGAGGGCACGT CATCTTGGCTGGTTCAAATGATTGCAGTGCTTGGATGTGGAATGCCGATAAAGGTGCTGTCCTCAGCGTATTTTATGGCCATGGTGGACCAGTTACCTGT GGAGATTTCACCCCTGATGGAAAAACTATCTGCACTGGTTCTGCTGATATGACTTTGAGAATATGGAATCCTAGGACTGGGGAGACCATACATACTGTAA GAGGTCATCCATATCATACGGCAGGATTAACTTGCTTGGCAATTACCTCTGACTCAACTCTTGCTCTTACTGGTGCTATGGATGGTTCTGTCAAAATTGT TAACATAGTTACTGGAAAGGTGGTCAGTACTTTATCTAGTCATTCAGATACAGTCTTATGCATCTCTCTGTCAAAATCATCAAGCTTTCCATGGGCGGCA ACTGGAGGCAGGGATCAACAACTTGTTATTTGGGATCTGGAACATTCAGCTGCTCGCAACATATGCAATCATGAGAGTGAAGTGACGTGCTTAACGTGGA TAGGCGTGTCGAGGTACATAGCCGCAGGATGTGCAGATGGGGACATAGTGATATGGGACAGTCGATCCGGAGAAAAGGTGAAAACTTTCAAGGGGCATGG TGAATGCATACAGTCGTTGTCAATGAACTCGAATCGAGAGTTTTTGGTTTCGGCGTCAGAAGATGGTACTGCCAGGGTTTTCGAGATTGCAGAGTTCAAG TAA
AA sequence Show only first row Show all	>Lus10031629 pacid=23155776 polypeptide=Lus10031629 locus=Lus10031629.g ID=Lus10031629.BGIv1.0 annot-version=v1.0 MQRDGDSSDDGEVYIDESDTLHEVILDDEDLPDVNDEDGEQAGYDEDDSMHTFTGHTSELYAVACSPTDPLLVATGGGDDRGFLWKLGQGDWAAEFGGHK DSVTSLAFSSDGQFLASAGLDSVVNVWDVSGNLKCMLEGPVVVEQTEEEAGPSAGFEWVKWHPRGHVILAGSNDCSAWMWNADKGAVLSVFYGHGGPVTC GDFTPDGKTICTGSADMTLRIWNPRTGETIHTVRGHPYHTAGLTCLAITSDSTLALTGAMDGSVKIVNIVTGKVVSTLSSHSDTVLCISLSKSSSFPWAA TGGRDQQLVIWDLEHSAARNICNHESEVTCLTWIGVSRYIAAGCADGDIVIWDSRSGEKVKTFKGHGECIQSLSMNSNREFLVSASEDGTARVFEIAEFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71840			transducin family protein / WD...		Lus10031629 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036929 [exp]	4.6	0.9132
AT5G25940			early nodulin-related (.1)		Lus10002236 [exp]	5.2	0.9096
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10015947 [exp]	7.4	0.9147
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10036023 [exp]	8.2	0.9242
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	8.9	0.9333
AT3G47670			Plant invertase/pectin methyle...		Lus10008625 [exp]	9.4	0.8972
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10004139 [exp]	9.6	0.9176
AT1G25420			Regulator of Vps4 activity in ...		Lus10041442 [exp]	12.4	0.9082
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10028823 [exp]	12.6	0.8930
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10008838 [exp]	12.8	0.9226

Compare expression of checked genes

Lus10031629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.