Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20860 582 / 0 LIP1 lipoic acid synthase 1 (.1) AT5G08415 360 / 4e-123 Radical SAM superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033710 [exp] 379 / 1e-124 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10041005 [exp] 354 / 1e-120 AT5G08415 553 / 0.0 Radical SAM superfamily protein (.1) Lus10013451 [exp] 337 / 1e-113 AT5G08415 536 / 0.0 Radical SAM superfamily protein (.1) Lus10001348 [exp] 79 / 2e-17 ND 78 / 3e-17
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G078400 [exp] 609 / 0 AT2G20860 583 / 0.0 lipoic acid synthase 1 (.1) Potri.005G086200 [exp] 608 / 0 AT2G20860 582 / 0.0 lipoic acid synthase 1 (.1) Potri.013G136000 [exp] 358 / 4e-122 AT5G08415 566 / 0.0 Radical SAM superfamily protein (.1) Potri.019G102700 [exp] 355 / 7e-121 AT5G08415 545 / 0.0 Radical SAM superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF04055 [flax] [poplar] Radical_SAM Radical SAM superfamily
Representative CDS sequence Show only first row Show all	>Lus10031630 pacid=23155893 polypeptide=Lus10031630 locus=Lus10031630.g ID=Lus10031630.BGIv1.0 annot-version=v1.0 ATGAAGCCCCGATTCCACACGCTAGCTCGCTGCATCCGCTCCTTTTCCTCCACAATCGAGCCATCGAAACCTAAAATCGAGCAGACCTTATCCAGCTTCC GAGCCCGATTAGCTGCGGAGTCACCAGTCCTCTCCGAATTCGTTAACCTCCAATCCGACGACTCTTACTCCGTCGAGGTCGGAACGAAGAAGAAACCCCT CCCGAAGCCTAAATGGATGAAGGAAGCGATCCCGGGAGGCGAGAAGTACGTCCAGATCAAGAAGAAGCTCCGGGAATTGAAGCTCCACACCGTCTGTGAA GAGGCCAAGTGCCCTAATTTGGGGGAGTGCTGGTCCGGCGGCGAAACTGGGACTGCCACGGCGACGATCATGATTCTCGGGGACACGTGTACCCGTGGCT GTAGGTTTTGTAATGTGAAGACGTCGAGAACTCCTCCTCCACCGGATCCGAACGAGCCGGGAAATGTGGCTGAGGCGATTGCGTCGTGGGGGTTGGATTA TGTTGTGATTACGAGTGTTGATCGTGACGATTTGGATGATCAAGGGAGCGGCCATTTCGCTGAAACTGTGCAGAAGTTGAAGGCTTTGAAGCCTAACATG CTTATTGAAGCCTTGGTTCCTGATTTCCGAGGGAACGCTGGCTGTGTCGAGAAGGTGGCAACATCAGGACTGGACGTACTTGCCCACAACATCGAGACAG TGGAAGAGCTTCAAGGAGCGGTTAGGGATCACCGTGCTAATTTCAAGCAATCTATAGACGTTCTGAAGATGGCTAAAGAATACGCACCTGCTGGAACGCT TACCAAGACATCGGTAATGCTGGGTTGCGGCGAAACTCCCGAACAGGTTGTGAAAACTATGGAGAAGGTGAGAGCTGCAGGTGTTGATGTGATGACATTC GGACAGTATATGAGACCTTCCAAGCGCCATATGCCGGTTTCTGAGTACATCACCCCCGAGGCCTTCGACAAGTACCGAGTTCTTGGCATGGACATGGGAT TTCGGTATGTGGCATCCGGACCGATGGTTCGATCGTCGTACAAGGCGGGTGAATTCTACATCAAATCCATGATCGATCAAGACCGGGCTGCATCCTCTTC GTCACCAGTTCGTATGTCCTGA
AA sequence Show only first row Show all	>Lus10031630 pacid=23155893 polypeptide=Lus10031630 locus=Lus10031630.g ID=Lus10031630.BGIv1.0 annot-version=v1.0 MKPRFHTLARCIRSFSSTIEPSKPKIEQTLSSFRARLAAESPVLSEFVNLQSDDSYSVEVGTKKKPLPKPKWMKEAIPGGEKYVQIKKKLRELKLHTVCE EAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPNEPGNVAEAIASWGLDYVVITSVDRDDLDDQGSGHFAETVQKLKALKPNM LIEALVPDFRGNAGCVEKVATSGLDVLAHNIETVEELQGAVRDHRANFKQSIDVLKMAKEYAPAGTLTKTSVMLGCGETPEQVVKTMEKVRAAGVDVMTF GQYMRPSKRHMPVSEYITPEAFDKYRVLGMDMGFRYVASGPMVRSSYKAGEFYIKSMIDQDRAASSSSPVRMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20860		LIP1	lipoic acid synthase 1 (.1)		Lus10031630 [exp]	0	1
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10002378 [exp]	1.0	0.8775
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10024108 [exp]	3.5	0.8538
AT3G48030			hypoxia-responsive family prot...		Lus10002358 [exp]	3.5	0.8474
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	5.3	0.8738
AT5G64230			unknown protein		Lus10033177 [exp]	7.3	0.8377
AT5G19860			Protein of unknown function, D...		Lus10013752 [exp]	10.6	0.8307
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	12.0	0.8301
AT4G22240			Plastid-lipid associated prote...		Lus10001099 [exp]	15.2	0.8243
AT1G13900			Purple acid phosphatases super...		Lus10037091 [exp]	15.5	0.7830
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Lus10033288 [exp]	16.0	0.7917

Compare expression of checked genes

Lus10031630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.