Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03590 565 / 0 Protein phosphatase 2C family protein (.1) AT4G03415 555 / 0 Protein phosphatase 2C family protein (.1.2) AT1G79630 390 / 4e-132 Protein phosphatase 2C family protein (.1.2.3) AT1G16220 390 / 5e-132 Protein phosphatase 2C family protein (.1) AT3G02750 385 / 3e-130 Protein phosphatase 2C family protein (.1.2.3) AT5G36250 361 / 2e-121 Protein phosphatase 2C family protein (.1) AT3G05640 298 / 5e-98 Protein phosphatase 2C family protein (.1.2) AT5G01700 298 / 8e-98 Protein phosphatase 2C family protein (.1.2) AT5G27930 296 / 4e-97 Protein phosphatase 2C family protein (.1.2) AT3G16800 254 / 4e-81 Protein phosphatase 2C family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033708 [exp] 794 / 0 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10039802 [exp] 641 / 0 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10018570 [exp] 640 / 0 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10000402 [exp] 387 / 9e-131 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10027122 [exp] 379 / 1e-127 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10022588 [exp] 359 / 6e-121 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10021486 [exp] 347 / 6e-116 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10041277 [exp] 366 / 1e-115 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10037431 [exp] 364 / 6e-114 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103100 [exp] 624 / 0 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 615 / 0 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 397 / 1e-134 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 391 / 1e-132 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.001G473300 [exp] 392 / 2e-132 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.004G066200 [exp] 387 / 8e-131 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.016G127900 [exp] 330 / 1e-108 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 328 / 7e-108 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.018G059800 [exp] 312 / 2e-103 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1) Potri.010G006200 [exp] 300 / 1e-98 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10031631 pacid=23155783 polypeptide=Lus10031631 locus=Lus10031631.g ID=Lus10031631.BGIv1.0 annot-version=v1.0 ATGGGTGCTTGTTTTTCAACTAGCAGTAGCAGTAGTTTTAGCAATAGGAGCAATAGAGACAAAGGTCGTCTGGGATTTCGGTTATTCGGGCAAAAGAGTG GCAAAGGGACATTCTTTGATCATACTATGGGGCTGCAGCATCTAGCCTCCATTCCAAACAGGATCATTGCCAATGGAAAGAGCAGAAGTTCATGTATCTT CACACAGCAAGGACGTAAAGGCATAAATCAGGATGCAATGATTGTATGGGAGGATTTCATGTCAGAAGGCGTGACGTTTTGTGGAGTGTTTGACGGCCAT GGACCGCACGGCCATCTTGTTGCCAGGAAGGTCAGGGACAGCTTGCCTGTGAAATTGATGTCTTTCTTGAACTCTCATCAGTCAGGATGTGAAGATGGAT CTGGATGTGAAGCAGAAGTTGAGAATGACGGTTCAGCTGAAGACAAATTGGATTCCTTGTGGAGAGAAGCGTTTATGAAGACTTATAAGTCGATGGATAA AGAGCTCAAATCTCATCCCAAACTGGACTGCTTCTGCAGTGGGAGCACTGCTGTCACAATAGTAAAACAGGGATCGAATCTGTTCATGGGCTATATTGGC GACTCTCGTGCAATCATGGGTTCGAAAGACAGCAACGGTTCCATGTTGGCCATCCAGTTGACCGTTGACCTGAAACCTGATCTGCCTAGGGAGGCTGAGC GTATCAAGAGGTGTAAAGGTAGAGTCTTTGCTTTGCAAGATGAGCCGGAAGTCTCAAGAGTGTGGTTGCCATTTGATGATGCTCCTGGACTAGCAATGGC CAGAGCGTTTGGAGACTTCTGCTTGAAAGAATATGGCGTGATATCCATACCAGAGTTCTCCCACCGGCTCCTCACGGAGAGGGATCAGTTCATTGTCCTC GCTTCCGATGGGGTCTGGGACGTGTTAAGCAACGAAGAGGTTGTGGAGATTGTGTCCTCAGCTGCAACACGGTCATCAGCTGCGAGGCTACTAATCGATG CAGCTTCGAAGCAATGGAAGCTCAAGTACCCAACTTCCAAGATGGATGATTGTGCAGTGGTTTGCTTGTATCTGGATGGCAAAATGGATGCAGAATCGGA CTGTGAAGGTGTTCAAGCCTTCTCATCCGCCACTTCTGCAGCTCTCCACAGCAGTAATGCTGCACTAGCAACCACTGAATCGGATGATGTGCAGCAGGAC GACACGGAGCCTAGTCTGCAGAGGAACGTTACGGTGAGATCTTCGGTAGGGATGATGTCAGGCTCGGCGGTGGTTGAAGATGAAGGTTGGACAGGGTTGG AAGGTGTAACGAGAGTGAACTCACTCGTTCAACTCCCTAGATTTTCGAACGAAAGACCCACCAGCTCATAG
AA sequence Show only first row Show all	>Lus10031631 pacid=23155783 polypeptide=Lus10031631 locus=Lus10031631.g ID=Lus10031631.BGIv1.0 annot-version=v1.0 MGACFSTSSSSSFSNRSNRDKGRLGFRLFGQKSGKGTFFDHTMGLQHLASIPNRIIANGKSRSSCIFTQQGRKGINQDAMIVWEDFMSEGVTFCGVFDGH GPHGHLVARKVRDSLPVKLMSFLNSHQSGCEDGSGCEAEVENDGSAEDKLDSLWREAFMKTYKSMDKELKSHPKLDCFCSGSTAVTIVKQGSNLFMGYIG DSRAIMGSKDSNGSMLAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVSRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTERDQFIVL ASDGVWDVLSNEEVVEIVSSAATRSSAARLLIDAASKQWKLKYPTSKMDDCAVVCLYLDGKMDAESDCEGVQAFSSATSAALHSSNAALATTESDDVQQD DTEPSLQRNVTVRSSVGMMSGSAVVEDEGWTGLEGVTRVNSLVQLPRFSNERPTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03590			Protein phosphatase 2C family ...		Lus10031631 [exp]	0	1
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10042533 [exp]	1.0	0.9027
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10013053 [exp]	1.4	0.8979
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019177 [exp]	6.2	0.8588
AT5G17620			unknown protein		Lus10013643 [exp]	6.3	0.8557
AT5G54850			unknown protein		Lus10043054 [exp]	6.5	0.8506
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Lus10007322 [exp]	6.8	0.7968
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	7.4	0.8312
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10028476 [exp]	8.7	0.8166
AT2G46910			Plastid-lipid associated prote...		Lus10010277 [exp]	8.8	0.8429
					Lus10029224 [exp]	9.1	0.7699

Compare expression of checked genes

Lus10031631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.