Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03420 317 / 2e-108 Protein of unknown function (DUF789) (.1) AT1G03610 312 / 1e-106 Protein of unknown function (DUF789) (.1) AT4G28150 274 / 6e-92 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G73210 228 / 1e-73 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G17830 206 / 1e-64 Protein of unknown function (DUF789) (.1) AT1G15030 174 / 7e-52 Protein of unknown function (DUF789) (.1) AT5G49220 172 / 7e-51 Protein of unknown function (DUF789) (.1) AT4G16100 164 / 1e-47 Protein of unknown function (DUF789) (.1) AT2G01260 161 / 6e-47 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT5G23380 122 / 1e-32 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033707 [exp] 434 / 5e-154 AT4G03420 359 / 2e-124 Protein of unknown function (DUF789) (.1) Lus10018572 [exp] 376 / 2e-131 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10039803 [exp] 333 / 3e-115 AT1G03610 303 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10038327 [exp] 209 / 1e-65 AT1G73210 319 / 1e-108 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10036189 [exp] 202 / 2e-62 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10037716 [exp] 164 / 2e-47 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10016841 [exp] 161 / 3e-46 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 154 / 2e-42 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10016842 [exp] 127 / 3e-34 AT4G16100 272 / 8e-89 Protein of unknown function (DUF789) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G144000 [exp] 384 / 6e-135 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 355 / 3e-123 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.017G155200 [exp] 237 / 1e-76 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 224 / 9e-72 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.010G000700 [exp] 185 / 2e-55 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.008G213300 [exp] 181 / 5e-54 AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1) Potri.010G120700 [exp] 164 / 8e-48 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.008G124000 [exp] 161 / 1e-46 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.017G152601 [exp] 75 / 1e-14 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1) Potri.004G068700 [exp] 72 / 5e-14 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [flax] [poplar] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Lus10031632 pacid=23155988 polypeptide=Lus10031632 locus=Lus10031632.g ID=Lus10031632.BGIv1.0 annot-version=v1.0 ATGATTTTTGACAAAGGGTCAACGCAATCGAACCTGGATCGGTTCCTCAATTTCACAACCCCTGTTGTCGAATCGCATTTCCTGCCAAAGTGCGGCTACG ACGAATGGAGCGCGTACGGCGCCGGAGTTCCGATCTCGGTGAACAACGACGGCGAGACTCTGGTTCAGTACTACGTCCCTTACCTCTCCGCCATCCAAAT CTTCACCAGTCGGTACAACAAGGAGGAAACGGACTCCGGCGACGGGGATCAGTCGACGACGAGGGATTCGTTCAGCAACGACACGTGTAGTGACGAGAGC GACAGCGACAAGGTGTGGAGATGGGACGGGTGTTCGTCGGAAGAAGGAGACGGCGGTGGCGGTCTTTGTCATCTGATCAATGATAGATTAGGGTATCTCT ATTTCCAGCATTTCGAACGGTCGACGCCGTATGGGAGAGTTCCATTGATGGATAAGATCAATGGATTAGCTAGAAGATACCCTGGTTTGTTGTCTTTGAG AAGTGTGGATCTCTCACCAGCTAGTTGGATGGCTGTGGCTTGGTATCCTATCTATCACATTCCAATGGGAAGAACAATCAAGGATTTGTCCACTTGTTTC CTTACTTACCACACCCTCTCATCCTCTTTTCAAGATATGGATGTGGAGGATGATATAGAGAGGCCGGAAAGAAAGAGAAAAGAAGGGGAGAGGATATCGT TGGCGCCATTTGGGATGGCGACATACAAAATGTACGGAGGAGGGAAAGTGTGGGTTTCGGGGAATTGTGGAAGGGATCAAGAGAGATTGGTGTCGATGTT GAGCGTAGCTGATTCGTGGCTAAAACAGCTGAGGGTTCAGCACCATGATTTCGATTACTTCACTGGCATTAGACATGGCTGA
AA sequence Show only first row Show all	>Lus10031632 pacid=23155988 polypeptide=Lus10031632 locus=Lus10031632.g ID=Lus10031632.BGIv1.0 annot-version=v1.0 MIFDKGSTQSNLDRFLNFTTPVVESHFLPKCGYDEWSAYGAGVPISVNNDGETLVQYYVPYLSAIQIFTSRYNKEETDSGDGDQSTTRDSFSNDTCSDES DSDKVWRWDGCSSEEGDGGGGLCHLINDRLGYLYFQHFERSTPYGRVPLMDKINGLARRYPGLLSLRSVDLSPASWMAVAWYPIYHIPMGRTIKDLSTCF LTYHTLSSSFQDMDVEDDIERPERKRKEGERISLAPFGMATYKMYGGGKVWVSGNCGRDQERLVSMLSVADSWLKQLRVQHHDFDYFTGIRHG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03420			Protein of unknown function (D...		Lus10031632 [exp]	0	1
AT1G79660			unknown protein		Lus10041631 [exp]	2.8	0.7382
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10038818 [exp]	7.6	0.7199
AT3G62260			Protein phosphatase 2C family ...		Lus10009993 [exp]	14.1	0.6952
AT5G10190			Major facilitator superfamily ...		Lus10027265 [exp]	14.7	0.6924
AT3G32930			unknown protein		Lus10013750 [exp]	15.9	0.6516
AT1G53050			Protein kinase superfamily pro...		Lus10031651 [exp]	20.9	0.6837
AT4G19880			Glutathione S-transferase fami...		Lus10038348 [exp]	21.1	0.6697
AT5G45840			Leucine-rich repeat protein ki...		Lus10017439 [exp]	26.6	0.6683
AT5G15460		MUB2	membrane-anchored ubiquitin-fo...		Lus10013190 [exp]	31.9	0.6614
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	39.7	0.6676

Compare expression of checked genes

Lus10031632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.