Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02410 341 / 1e-119 cytochrome c oxidase assembly protein CtaG / Cox11 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017058 [exp] 127 / 1e-35 AT1G02410 74 / 5e-15 cytochrome c oxidase assembly protein CtaG / Cox11 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G078500 [exp] 328 / 1e-116 AT1G02410 316 / 2e-110 cytochrome c oxidase assembly protein CtaG / Cox11 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04442 [flax] [poplar] CtaG_Cox11 Cytochrome c oxidase assembly protein CtaG/Cox11
Representative CDS sequence Show only first row Show all	>Lus10031633 pacid=23155909 polypeptide=Lus10031633 locus=Lus10031633.g ID=Lus10031633.BGIv1.0 annot-version=v1.0 ATGAACAGTAGTAGCAGTTTCAGCTTTAAGCGGTATTTTGCTGTAAGTGCAGCTGGTGGATCTTCTGCTACTGAGCAGAAGTCGAGGAAGACATTAATGT ATCTTACGGGATTGGTTGTTGTGATGGTGGGTTGTACATATGCGGCGGTTCCTCTGTACAGAACATTTTGCCAAGCCACTGGTTATGGCGGTACTGTACA GCGTCGTGAGACTGTTGAAGAGAAGATTTCACGGCATGCTAAAGACGGAACGGTGGCAATGAGAGAGATTGTGGTGCAGTTTAATGCTGATGTAGCTGAT GGAATGCCATGGAAGTTTATTCCTACGCAAAGAGAGGTGAGAGTAAAACCCGGGGAAAGTGCCCTTGCATTTTATACAGCTGAGAATCGAAGTTCAACTC CAATAACTGGTGTCTCCACATATAATGTTACTCCTATGAAGGCAGGTGTATACTTCAATAAAATACAGTGCTTCTGCTTTGAAGAACAACGTCTACTTCC TGGGGAGCAGGTTGACATGCCTGTATTCTTTTACATAGATCCAGAGTTTGAAACGGATCCTAGGATGGATGGGATTAACAACATTATCTTGTCCTACACT TTCTTCAAGATTTCAGATGAATAA
AA sequence Show only first row Show all	>Lus10031633 pacid=23155909 polypeptide=Lus10031633 locus=Lus10031633.g ID=Lus10031633.BGIv1.0 annot-version=v1.0 MNSSSSFSFKRYFAVSAAGGSSATEQKSRKTLMYLTGLVVVMVGCTYAAVPLYRTFCQATGYGGTVQRRETVEEKISRHAKDGTVAMREIVVQFNADVAD GMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAGVYFNKIQCFCFEEQRLLPGEQVDMPVFFYIDPEFETDPRMDGINNIILSYT FFKISDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02410			cytochrome c oxidase assembly ...		Lus10031633 [exp]	0	1
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10004342 [exp]	2.0	0.8044
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10031842 [exp]	4.2	0.7449
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10037969 [exp]	5.7	0.7550
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	7.7	0.7760
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	9.5	0.7471
AT1G58280			Phosphoglycerate mutase family...		Lus10032821 [exp]	13.0	0.7261
AT4G35140			Transducin/WD40 repeat-like su...		Lus10023993 [exp]	13.7	0.7385
AT5G17620			unknown protein		Lus10001340 [exp]	17.4	0.7472
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034350 [exp]	19.1	0.6973
AT4G01040			Glycosyl hydrolase superfamily...		Lus10005946 [exp]	20.7	0.7237

Compare expression of checked genes

Lus10031633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.