Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15730 1380 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 1357 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 1033 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT2G42010 731 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G00240 715 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11830 699 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G11840 693 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11850 690 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G35790 659 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT1G55180 593 / 0 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033706 [exp] 1683 / 0 AT3G15730 1382 / 0.0 phospholipase D alpha 1 (.1) Lus10039806 [exp] 1512 / 0 AT3G15730 1389 / 0.0 phospholipase D alpha 1 (.1) Lus10018575 [exp] 1509 / 0 AT3G15730 1388 / 0.0 phospholipase D alpha 1 (.1) Lus10041787 [exp] 1083 / 0 AT1G52570 1087 / 0.0 phospholipase D alpha 2 (.1) Lus10006819 [exp] 715 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 714 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10041855 [exp] 699 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 695 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 692 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032800 [exp] 1463 / 0 AT3G15730 1419 / 0.0 phospholipase D alpha 1 (.1) Potri.001G193000 [exp] 1454 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1) Potri.018G131200 [exp] 1231 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1) Potri.006G253900 [exp] 1125 / 0 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1) Potri.014G074700 [exp] 722 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 716 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.002G016100 [exp] 711 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.001G112100 [exp] 709 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.005G246000 [exp] 708 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 706 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif CL0479 [flax] [poplar] PF12357 [flax] [poplar] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Lus10031634 pacid=23155937 polypeptide=Lus10031634 locus=Lus10031634.g ID=Lus10031634.BGIv1.0 annot-version=v1.0 ATGGCGCAATTCCTTGTGCACGGTACTTTACATGTTACCATCTTTGAGGTGGATAAGCTTCCCGGCGCTGACAGCCATAGGCCCAATTTCTTTAAGAAGC TTGTTGATAACATTGGAGAGAAAGTTGGGATTGGAAACGGGATAAGCAAACTCTATGCAACCATTGACATGGAGAAGGCTAGGGTTGGGAGAACCAGAAT TATTGAAAATGAGTACAAAAACCCGAGGTGGTATGAATCTTTCCATATTTACACTGCGCACATGGCTTCGAATGTCATATTCACAGTCAAGGATGACAAT CCAATCGGGGCGACATTGATTGGACGAGCATATGTACCTGTTTCCGAGATACTGGATGGGGAAGAGGTAGATCGATGGGTTGAGATATTGGATGAGGATA AGAACCCGATCGATGCGGGTTCTAAGATCCATGTGAAGCTTCAGTACTTTGATGTGACCAAAGACCGCAATTGGGGTCTAGGAATCAAAAGTCCGAAGTT TCCTGGCGTGCCTTACACATTCACCTCTCAGAGACAAGGCTGTAAAGTTTCTCTGTACCAGGATGCTCATGTCCCTGACAACTTCATTCCTAAGATCCCT CTTGCAGGAGGCAATTTCTATGAGCCCCATAAGTGTTGGGAAGATATATTTGATGCGATAACAAATGCTAAGCACTTCATCTACATTACTGGTTGGTCTG TTTATACTGAAATCAGCTTAATAAGGGATTCCAGGAGGCCGAAGCCCGGGGGAGAGATTATGCTTGGTGAACTGCTAAAGAAGAAGGCAAGTGAAGGTGT TAGGGTCCTTATGCTTGTTTGGGATGACAGAACATCTGTTAAGCTGCTTAAAAAGGACGGTCTGATGGCCACCCATGATGAAGAAACCATGCAGTACTTC CAAAACACTGACGTAAACTGCGTTCTGTGTCCTCGAAATCCCGACGATGGCGGTAGCTTCGTTCAAGATCTTCAGATCTCGACAATGTTCACTCATCACC AGAAGATTGTTGTGGTCGACCATGACATGCCTAATGGAAGCTCAGAAAGGAGGAGAATTGTTAGTTTTGTCGGTGGCATTGATCTGTGTGACGGTAGGTA CGATACCCCCTTCCACTCAGTGTTCAGGACATTGGACACGGCTCACCACGACGACTTCCATCAACCCAACTTCGAAGGTGCTTCTATCACGAAGGGTGGC CCTAGAGAACCGTGGCATGACATCCACTCCCGTCTAGAAGGACCGGTTGCCTGGGATGTTCTGTTCAACTTTGAGCAAAGGTGGAAGAAGCAAGGTGGTA AAGATTTGCTTGTTCAGCTGAGGGATCTTGAAGACGTCATCATCCCACCATCCCCGGTTACCTTTGATGATGATCGTGAAACGTGGAATGTCCAGGTGTT CAGGTCCATCGATGGCGGGGCAGCATTTGGCTTCCCCGAAACTCCTGAAGATGCAGCTAGAGCTGGACTCGTCAGCGGAAAGGATAACATCATCGACAGA AGTATTCAGGATGCATACATCAACGCCATCCGACGCGCAAAGAACTTCATCTACATCGAAAACCAGTACTTCCTCGGGAGTTGCTACGGCTGGTATGGCG ATGACATCAATCTCGGTGACATTGGTTGCTTGCATTTGATTCCTAAGGAGCTTTCACTTAAGATAGTTAGCAAGATAGAGGCAGGTGAAAGGTTTACTGT GTATGTAGTTGTTCCGATGTGGCCGGAGGGCATCCCGGAGAGTGCATCGGTTCAGGCCATCTTAGATTGGCAGAGGAGGACTATGGATATGATGTATCGA GATATCGTCCAGGCTCTCAAAGCTAGGGGCACCGTGGAGGACCCTCGGAACTACTTGACATTCTTCTGTCTTGGCAACCGCGAAGCGAAGAAAGATGGGG AGTATGAACCTTCAGAAAGACCAGACCCTGATACTGATTACCTTAGAGCTCAGGAAGCACGACGGTTTATGATCTATGTCCACGCAAAGATGATGATCGT TGACGACGAGTACATAATAGTTGGCTCAGCCAACATCAACCAGCGGTCAATGGACGGGTCCAGGGACTCCGAAATCGCCATGGGAGCTTACCAGCCGTAC CACCTGACCGTTAGGGAGCCAGCTCGAGGCCAAGTCCACGGATTCCGCCTTTCACTGTGGTACGAACACCTCGGCATGCTGGAGGACAGCTTCCTGTTCC CCGAGAGCGAAGAGTGCATACGAAAAGTGAACGAAGTTGCCGACAAGTACTGGGATATGTACTCGAGCGAGTCGCTCGAGCACGATATCCCAGGCCATCT GCTCCGCTACCCGATTGGTGTAGCGAGTGATGGAGACGTGACCGAGCTTCCTGGAGCTGAGTTCTTCCCTGACACCAAGGCTCGTGTGCTCGGTGCAAAA TCGGATTACCTCCCTCCTATCCTCACTACTTAA
AA sequence Show only first row Show all	>Lus10031634 pacid=23155937 polypeptide=Lus10031634 locus=Lus10031634.g ID=Lus10031634.BGIv1.0 annot-version=v1.0 MAQFLVHGTLHVTIFEVDKLPGADSHRPNFFKKLVDNIGEKVGIGNGISKLYATIDMEKARVGRTRIIENEYKNPRWYESFHIYTAHMASNVIFTVKDDN PIGATLIGRAYVPVSEILDGEEVDRWVEILDEDKNPIDAGSKIHVKLQYFDVTKDRNWGLGIKSPKFPGVPYTFTSQRQGCKVSLYQDAHVPDNFIPKIP LAGGNFYEPHKCWEDIFDAITNAKHFIYITGWSVYTEISLIRDSRRPKPGGEIMLGELLKKKASEGVRVLMLVWDDRTSVKLLKKDGLMATHDEETMQYF QNTDVNCVLCPRNPDDGGSFVQDLQISTMFTHHQKIVVVDHDMPNGSSERRRIVSFVGGIDLCDGRYDTPFHSVFRTLDTAHHDDFHQPNFEGASITKGG PREPWHDIHSRLEGPVAWDVLFNFEQRWKKQGGKDLLVQLRDLEDVIIPPSPVTFDDDRETWNVQVFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDR SIQDAYINAIRRAKNFIYIENQYFLGSCYGWYGDDINLGDIGCLHLIPKELSLKIVSKIEAGERFTVYVVVPMWPEGIPESASVQAILDWQRRTMDMMYR DIVQALKARGTVEDPRNYLTFFCLGNREAKKDGEYEPSERPDPDTDYLRAQEARRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGSRDSEIAMGAYQPY HLTVREPARGQVHGFRLSLWYEHLGMLEDSFLFPESEECIRKVNEVADKYWDMYSSESLEHDIPGHLLRYPIGVASDGDVTELPGAEFFPDTKARVLGAK SDYLPPILTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10031634 [exp]	0	1
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10033706 [exp]	1.0	0.9589
AT3G60030	SBP	SPL12	squamosa promoter-binding prot...		Lus10004523 [exp]	3.7	0.8677
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10020261 [exp]	4.5	0.8419
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10023659 [exp]	5.7	0.8210
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10024276 [exp]	8.5	0.8441
AT3G07190			B-cell receptor-associated pro...		Lus10038188 [exp]	11.0	0.8220
AT1G43690			ubiquitin interaction motif-co...		Lus10024546 [exp]	11.7	0.8480
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10012332 [exp]	13.4	0.8405
AT3G58050			unknown protein		Lus10017239 [exp]	14.7	0.8309
AT4G14010		RALFL32	ralf-like 32 (.1)		Lus10023223 [exp]	16.2	0.8038

Compare expression of checked genes

Lus10031634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.