Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65690 86 / 6e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G54540 82 / 2e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G36970 76 / 2e-16 NHL25 NDR1/HIN1-like 25 (.1) AT5G21130 66 / 2e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 50 / 2e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 47 / 2e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22200 43 / 6e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G09590 40 / 0.0007 NHL22 NDR1/HIN1-like 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033705 [exp] 358 / 9e-126 AT1G65690 114 / 1e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031888 [exp] 88 / 1e-20 AT1G54540 236 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031317 [exp] 87 / 4e-20 AT1G54540 231 / 1e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007364 [exp] 75 / 1e-15 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020783 [exp] 66 / 1e-12 AT5G36970 229 / 2e-75 NDR1/HIN1-like 25 (.1) Lus10026428 [exp] 49 / 2e-06 AT5G11890 209 / 7e-67 EMBRYO DEFECTIVE 3135, unknown protein Lus10003824 [exp] 47 / 4e-06 AT1G17620 191 / 5e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G135800 [exp] 138 / 6e-40 AT1G65690 112 / 4e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.019G102500 [exp] 91 / 1e-22 AT1G65690 78 / 9e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G145500 [exp] 87 / 4e-20 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1) Potri.017G154000 [exp] 84 / 3e-19 AT1G54540 242 / 1e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G067100 [exp] 84 / 7e-19 AT1G54540 203 / 3e-65 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G197600 [exp] 81 / 6e-18 AT2G27080 264 / 8e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.015G148200 [exp] 80 / 2e-17 AT5G36970 227 / 2e-74 NDR1/HIN1-like 25 (.1) Potri.018G052500 [exp] 50 / 4e-07 AT5G11890 198 / 3e-62 EMBRYO DEFECTIVE 3135, unknown protein Potri.006G228600 [exp] 42 / 0.0001 AT5G11890 171 / 4e-52 EMBRYO DEFECTIVE 3135, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031635 pacid=23155846 polypeptide=Lus10031635 locus=Lus10031635.g ID=Lus10031635.BGIv1.0 annot-version=v1.0 ATGGACCACCGTGGCCGCGGCGATTCTTTGTCGTCGGACACCCTCCCACCCCAAACATCCCTCCCGAAGTATTCAATCCTCGACAACAACCCATCACTAT CACCACCACCGACAACCGCCGTCATAAAACCTCCGCCGGAAGGTAGGCGGGTCCCTCCCCAAAGACCACTGCAATCCGGGCGCGCAGGAATCTGTTACAA ATGCGTGTGCTGTTGCTTCTGCTTCTGGTTCCTCCTAATCCTCGCGTTGGTCGGCCTCGTGGTCCTCCTCTACTCGATCCTCCAGCCTCGGTCTCCGTCT TTCTCCGTCCAGCATTTCCAAGTCAACGCCTTCGACCTCAAGCAACAAGACTCGTCTTCCTCCGTCCTGTCGAATGAGATCGTCCTGATTTTGAAATCGA AGAATCCGAATAAAGCGATCGGATTCTTCTACGGCAGGGGAAGCACTGTTTCCATGTGGTACAACGGCACCATTTTCTCTTCAGGAAAGCTTCCTGCTTC CCGTCAGGATCCTGACAGTACAACCCTGACGAACATCACGATGCAGGGAACGGTGGATTTCGGAAGGGAGATTCGGGAGAGGTTTCGGAAGGACGAGGAG GAAGAGGGACGGATTCCCTTGCTTTTGATGTTTAAGGCTCCTGTCGCTGTTGTGATCCAGTCGTTCCCGTTGAGGGAGATCGCGGTCTTTGTCAACGGGT CTTTAGTTGTTGATAGCTTGAGTCGTCCTGACAGGATTCCGAAGATTTTGTCTTCCCAGTATTCATATAGCATTGGGTTGTAA
AA sequence Show only first row Show all	>Lus10031635 pacid=23155846 polypeptide=Lus10031635 locus=Lus10031635.g ID=Lus10031635.BGIv1.0 annot-version=v1.0 MDHRGRGDSLSSDTLPPQTSLPKYSILDNNPSLSPPPTTAVIKPPPEGRRVPPQRPLQSGRAGICYKCVCCCFCFWFLLILALVGLVVLLYSILQPRSPS FSVQHFQVNAFDLKQQDSSSSVLSNEIVLILKSKNPNKAIGFFYGRGSTVSMWYNGTIFSSGKLPASRQDPDSTTLTNITMQGTVDFGREIRERFRKDEE EEGRIPLLLMFKAPVAVVIQSFPLREIAVFVNGSLVVDSLSRPDRIPKILSSQYSYSIGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65690			Late embryogenesis abundant (L...		Lus10031635 [exp]	0	1
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10042560 [exp]	12.8	0.5563
AT2G28680			RmlC-like cupins superfamily p...		Lus10040867 [exp]	149.7	0.4388

Compare expression of checked genes

Lus10031635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.