Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04980 303 / 2e-91 unknown protein AT1G11070 277 / 1e-82 unknown protein AT1G61080 219 / 8e-61 Hydroxyproline-rich glycoprotein family protein (.1) AT3G25690 74 / 2e-13 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT1G48280 71 / 1e-12 hydroxyproline-rich glycoprotein family protein (.1) AT1G07120 69 / 4e-12 unknown protein AT4G18570 65 / 1e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033704 [exp] 983 / 0 AT4G04980 311 / 4e-94 unknown protein Lus10018473 [exp] 281 / 2e-82 AT4G04980 347 / 1e-104 unknown protein Lus10038307 [exp] 276 / 4e-81 AT1G11070 330 / 2e-99 unknown protein Lus10011209 [exp] 277 / 7e-81 AT4G04980 336 / 2e-100 unknown protein Lus10036174 [exp] 206 / 3e-62 AT4G04980 236 / 6e-73 unknown protein Lus10031863 [exp] 69 / 7e-12 AT1G07120 393 / 2e-135 unknown protein Lus10034382 [exp] 61 / 3e-09 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034264 [exp] 61 / 3e-09 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10000986 [exp] 56 / 1e-07 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G038400 [exp] 337 / 4e-104 AT4G04980 387 / 4e-121 unknown protein Potri.011G047100 [exp] 324 / 3e-99 AT4G04980 358 / 1e-109 unknown protein Potri.001G317001 [exp] 291 / 7e-89 AT4G04980 320 / 5e-98 unknown protein Potri.010G003100 [exp] 60 / 4e-09 AT1G48280 356 / 2e-116 hydroxyproline-rich glycoprotein family protein (.1) Potri.010G130800 [exp] 60 / 5e-09 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G279000 [exp] 59 / 5e-09 AT1G07120 440 / 2e-153 unknown protein Potri.001G460300 [exp] 58 / 2e-08 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.009G073600 [exp] 57 / 3e-08 AT1G07120 434 / 4e-151 unknown protein Potri.011G156500 [exp] 55 / 2e-07 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.004G054900 [exp] 53 / 6e-07 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031636 pacid=23155797 polypeptide=Lus10031636 locus=Lus10031636.g ID=Lus10031636.BGIv1.0 annot-version=v1.0 ATGGTTTCATCGCGAGTTTTTATTGAACTTTATTATCGACAGAGTGGATACAGGGGAACCACTGGTCACGGTGCAGTCCAGTACCAGCTGCTGATGGGAT TGATTCTAGATCTCCGGGACACGTACCCTGAGGCTTCGAACTGCAGCAATATTGCTTCTTCTGAAACAGCAGAAACTCCCATGAATCAGGTAATGATTCA ACTCTACAATGTCTTGAAATCCGTTGGAGAGTCGTGGTATGGAAACAATGACGAAGAAGAAGGGTCGAGTGATAGTAGCATGGAGAACTCGACGCTCGAG CAACTCAGTGAAAAGGTGCTTGGAAAGATCACTGAATTGATTAACACTATAAAGGAAACCCGAAATCCTGATGAAGGCTCTGTCAGTACTATGGAAATGT GCACTGATACGAATTCGAGGAAGAGAGCTACAATCAGTCCATTGAACAGTCCGACATCATCTTTGGAGAATTCTCCAAGGCTTTTCATACTCGAAGCTGT GAAGAAACTGAAGCCAATAGAAATGAAGTACCTTCCGTCCCAGTTGGTGTCTCCTCTGAGTAGCCAAGAACGTGCCTACTATGTCAACGATGCAAGAGGA TCTCAGGTGTTTGATAACAGAAAGGCTGAAAATGTTACTTCAGGATTCCAAGCTGAAATGAATTCCAAAGAACCTGAAGAGTTCCAAGATGGTAACTTGT TTATGAGAGCCTCAGGTTCTGATTCAAGCATTATGATGTCTGTAACAAGTTACAAGTCAAATATGACAACAGAAGCAAAAATTGCAGCAGCGACAGGTGT TCCGTGTCCACCAAGCAAGCTTATTGATAACATTTGTAGTACTGCACAAGTCACTGGCTCGGAACCAACCCGGAAATCTGATGCAAACGAATTGCCATCG ATGCAGAGACAACCACCTCCTCCTCCTCCTCCGCCATTGCCACCTTCAAGCAAGGTCGTCGCATGTTCTGGTTCAAGCGTCAAACATGATACAAATAGAT CGTCGGAGATACAGAAAATACCACCTCCACCTCCTCCTCCGCCATTGCCACCAAAGAATCTGTCCTTAAAGGAAACTACTGTATCTCCATCTCCACCTCC ACCATGGAATCCTAATTCGACAGAATCGTCCACAAAAGGATCTATGCCTCCGCCGCCTCCTCCACCAGGGCTAGGGAAAGTACTCCAGCGTCCGAGGAAT AACTCGAGATTAAAGAGATCAATCCTGATGGTATATGTATATCAATGTCTGAGGAAAAAGGAACAAGGTTCAGCTTCAAAGAGTAATAAAGCAACTCAAG GGAAAAAATCTAAAGTTGGTAAAACTGCAGCGGCCAAACAAGGAATGGCTGAAGCAATTGAAGATATCACCAGAAAATCAGCATATTATCAGAAGATTGA GGAGGATGCCAAGAAATATGCAGCAATGGTGCTGGAGATCAAGGCTGCCGTTAGCACTTTCGAGACAAAGGACATGGAAGAACTTCTTAAATTCGTCAGC TATGTCGAACGAAACATGGAGAAATTATCAGACGAATCTCAGGTGCTGGCAAGGTTTGAAGACTTCCCAGAAAAGAAACTCGAAGCATTACAAGGAGCAG GTGCGCTATACTCGAAGCTGAAAGGAATGTCTAAGAAGCTAAAGGAATGGAAAATAGAACCTCCTACAGGCCAGCTGCTCGATAAGATCGAAACCTACTT TAACAAGATCAAGCGTGAGATAGAGACAGTGGAGCTAAGCAAAGACGAAGAATCGAAGCGGTTTAAGAGCAACAACATCCACTTTGACTTCAACGTTTTA GTACAGGTGAAAGAATCGATGGTCGATGTTTCTTCGAGCTGCATGGAGCTGGCACTCAAGGAATGGAGGGAAGCAAAGGCATCAAAGGGTGCAAATGGTG GCGGAACGAAACTGAAAGGCAAAGCAACAGCATCAGGATTGGTTCTGTGGAGGACGTTCCAGTTCGCTTACCGAGTGTATAGCTTCGCAGGAGGACAGGA TGATCGTGCGGACTTGCTGACGAGAGAGTTAGCTTTCGCAATGGAAATCGATCCTTCACCCAAGTAG
AA sequence Show only first row Show all	>Lus10031636 pacid=23155797 polypeptide=Lus10031636 locus=Lus10031636.g ID=Lus10031636.BGIv1.0 annot-version=v1.0 MVSSRVFIELYYRQSGYRGTTGHGAVQYQLLMGLILDLRDTYPEASNCSNIASSETAETPMNQVMIQLYNVLKSVGESWYGNNDEEEGSSDSSMENSTLE QLSEKVLGKITELINTIKETRNPDEGSVSTMEMCTDTNSRKRATISPLNSPTSSLENSPRLFILEAVKKLKPIEMKYLPSQLVSPLSSQERAYYVNDARG SQVFDNRKAENVTSGFQAEMNSKEPEEFQDGNLFMRASGSDSSIMMSVTSYKSNMTTEAKIAAATGVPCPPSKLIDNICSTAQVTGSEPTRKSDANELPS MQRQPPPPPPPPLPPSSKVVACSGSSVKHDTNRSSEIQKIPPPPPPPPLPPKNLSLKETTVSPSPPPPWNPNSTESSTKGSMPPPPPPPGLGKVLQRPRN NSRLKRSILMVYVYQCLRKKEQGSASKSNKATQGKKSKVGKTAAAKQGMAEAIEDITRKSAYYQKIEEDAKKYAAMVLEIKAAVSTFETKDMEELLKFVS YVERNMEKLSDESQVLARFEDFPEKKLEALQGAGALYSKLKGMSKKLKEWKIEPPTGQLLDKIETYFNKIKREIETVELSKDEESKRFKSNNIHFDFNVL VQVKESMVDVSSSCMELALKEWREAKASKGANGGGTKLKGKATASGLVLWRTFQFAYRVYSFAGGQDDRADLLTRELAFAMEIDPSPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04980			unknown protein		Lus10031636 [exp]	0	1
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10031339 [exp]	1.4	0.7920
AT4G17565			F-box family protein with a do...		Lus10035492 [exp]	6.1	0.8022
AT3G45400			exostosin family protein (.1)		Lus10020308 [exp]	22.4	0.7351
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039429 [exp]	26.5	0.7895
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033720 [exp]	33.9	0.7863
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10006613 [exp]	36.2	0.7556
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10027621 [exp]	36.7	0.7267
AT1G51990			O-methyltransferase family pro...		Lus10002668 [exp]	45.7	0.7659
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10021222 [exp]	52.0	0.7200
AT3G25820		ATTPS-CIN	"terpene synthase-like sequenc...		Lus10006356 [exp]	61.5	0.7470

Compare expression of checked genes

Lus10031636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.