Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20780 655 / 0 AtPLT4 Major facilitator superfamily protein (.1) AT3G18830 410 / 7e-138 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 394 / 5e-132 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 394 / 1e-131 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G18480 387 / 3e-129 AtPLT3 Major facilitator superfamily protein (.1) AT4G36670 380 / 2e-126 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT5G16150 212 / 1e-61 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT2G43330 207 / 6e-60 ATINT1 inositol transporter 1 (.1) AT1G75220 197 / 1e-56 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT5G17010 196 / 5e-56 Major facilitator superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033702 [exp] 917 / 0 AT2G20780 691 / 0.0 Major facilitator superfamily protein (.1) Lus10018581 [exp] 715 / 0 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1) Lus10039813 [exp] 431 / 3e-149 AT2G20780 430 / 1e-149 Major facilitator superfamily protein (.1) Lus10023640 [exp] 416 / 1e-140 AT3G18830 516 / 7e-180 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 415 / 6e-140 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 415 / 8e-140 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 414 / 4e-139 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 392 / 4e-131 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 389 / 9e-130 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G135200 [exp] 681 / 0 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 603 / 0 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.009G113600 [exp] 424 / 2e-143 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 395 / 3e-132 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 380 / 1e-126 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.006G158700 [exp] 379 / 2e-126 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 376 / 7e-125 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.007G126800 [exp] 215 / 4e-63 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 213 / 2e-62 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.004G097800 [exp] 209 / 3e-60 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10031637 pacid=23155995 polypeptide=Lus10031637 locus=Lus10031637.g ID=Lus10031637.BGIv1.0 annot-version=v1.0 ATGGCGAACTGGGTTTCGATCTGGGAGGCAAAAACAAGTACAAGAGGATGGATTCCGATCTCGCCATCTCCGCCGCCGACGAAGACTTCGACGACGCTTC TGATCATCTCCGGCAGCTGCAAAGGAACAGCACTACTAGGAAGTACGTCCTCGCCTGCGCCGTCTTTGCTTCTCTCAACTCCGTCCTTCTTGGCTACGGT AATTGATTTCCCTGCCATCTTTACTTTCGAATCTAACGATCTAGAATTCGGAATGCAACGCGGCATACTCCGGTTGGTTCTTACTGGTTTTCTGGGTAAA ATGATTTCTGCAGATGTGGGAGTGATGAGCGGGGCGATCATATTCATCCAGGAGGATCTGAAGATAACCGAGGTACAAGAAGAAGTTCTAGTCGGGATAC TAAGCATCGTGTCACTATTCGGCAGCTTAGCTGGTGGGAGAACATCGGACGCCATTGGAAGGAAATGGACGATGGCATTAGCTGCATTAGTATTCCAAGC AGGAGCAATAGTGATGACACTTGCTCCATCGTTCCTAATCCTAATGATCGGCCGGTTCCTGGCCGGAATCGGAATCGGGTTGGGCGTCATGATTGCTCCT GTCTACATTGCTGAGATATCCCCAACTGTTGCTAGAGGATCCCTCACTTCTTTCCCCGAGATCTTCATCAATTTTGGAATCTTGCTTGGGTATGTCTCAA ACTACGCGTTTTCGGGGCTTTCAGTTCATATAAGCTGGAGAGTAATGCTTGCTGTGGGGATCCTGCCGTCGGTTTTCATTGGTTTTGCACTTTTCATCAT ACCCGAGTCGCCCAGGTGGTTGGTGATGCAGAACCGGATTGACGAGGCTCGATCGGTGCTGGAGAAGACGATCGAGAACGAGAAGGAGGTGGACGATCGG CTGGCCGAGATTCTAGTTGCTGCAGGTGGGAATTCGGAGAAGAAGGCGGTGTGGCGCGAAATGTTGAGCCCGTCTCCGGTGCTGAGAAGAATGCTGGTGA CCGGATTTGGAATCCAGTGCTTTCAACAGATTACAGGGACGGATGCGATTGTTTACTACAGTCCCGAGATCTTCAAAGCAGCCGGGATCGAGGACAAATC GAATCTGCTGGCTGCAACGGTTGCAGTAGGGGTTTCGAAGACCGTTTTCATATTGGTAGCTATACTGTTGATTGACAAACTAGGGAGGAAGCCATTGCTG TACATCAGCACAATTGGGATGACGTGTTGCTTGTTCAGCCTGGGAGTCACTCTTACAGTACTGGGAGGGCACGGGGATTTTGCGATCGGGTTGGCGATAT TGTTCGTTTGCGCTAATGTTGCCTTCTTCTCGGTAGGGATCGGACCGGTCTGCTGGGTTTTGACTTCCGAGATATTTCCTTTGAGGCTGAGAGCGCAGGC TGCCGCGCTTGGTGCGGTTGGGAATAGGGTGTGCAGTGGATTGGTTGCCATGTCTTTCCTTTCGGTATCAAATGATATCTCGGTTGGTGGGAGTTTCTTC TTGTTCTCGGCTATTTCCGGGTTTGCGGTGTTGTTCGTGTACACGTTGGTTCCCGAGACGAAAGGGAAGTCGTTGGAGGAAATCGAGCTGCTGTTCCAGA GTGGACGAGGCTTGGAAAGAGGTGGTGAGGTGGAGATGGGTGATGCAGAGCGTCTCGTGCAGAACAAATGA
AA sequence Show only first row Show all	>Lus10031637 pacid=23155995 polypeptide=Lus10031637 locus=Lus10031637.g ID=Lus10031637.BGIv1.0 annot-version=v1.0 MANWVSIWEAKTSTRGWIPISPSPPPTKTSTTLLIISGSCKGTALLGSTSSPAPSLLLSTPSFLATVIDFPAIFTFESNDLEFGMQRGILRLVLTGFLGK MISADVGVMSGAIIFIQEDLKITEVQEEVLVGILSIVSLFGSLAGGRTSDAIGRKWTMALAALVFQAGAIVMTLAPSFLILMIGRFLAGIGIGLGVMIAP VYIAEISPTVARGSLTSFPEIFINFGILLGYVSNYAFSGLSVHISWRVMLAVGILPSVFIGFALFIIPESPRWLVMQNRIDEARSVLEKTIENEKEVDDR LAEILVAAGGNSEKKAVWREMLSPSPVLRRMLVTGFGIQCFQQITGTDAIVYYSPEIFKAAGIEDKSNLLAATVAVGVSKTVFILVAILLIDKLGRKPLL YISTIGMTCCLFSLGVTLTVLGGHGDFAIGLAILFVCANVAFFSVGIGPVCWVLTSEIFPLRLRAQAAALGAVGNRVCSGLVAMSFLSVSNDISVGGSFF LFSAISGFAVLFVYTLVPETKGKSLEEIELLFQSGRGLERGGEVEMGDAERLVQNK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	0	1
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	2.8	0.9490
					Lus10020006 [exp]	2.8	0.9425
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039175 [exp]	4.2	0.9494
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10022680 [exp]	4.4	0.9547
AT4G25670			unknown protein		Lus10014961 [exp]	5.8	0.9336
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	6.9	0.9546
AT3G22970			Protein of unknown function (D...		Lus10024840 [exp]	6.9	0.9276
AT2G38820			Protein of unknown function (D...		Lus10018754 [exp]	7.1	0.9406
AT2G37585			Core-2/I-branching beta-1,6-N-...		Lus10024404 [exp]	9.0	0.9256
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	9.2	0.9447

Compare expression of checked genes

Lus10031637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.