Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20770 241 / 2e-75 GCL2 GCR2-like 2 (.1) AT1G52920 220 / 2e-67 GPCR, GCR2 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) AT1G65680 206 / 2e-63 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT1G65681 181 / 1e-54 EXPB6 beta expansin 6 (.1) AT2G45110 180 / 7e-54 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT4G28250 171 / 2e-50 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G20750 157 / 4e-45 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT3G60570 154 / 4e-44 ATHEXPBETA1.3, ATEXPB5 expansin B5 (.1) AT5G65280 136 / 2e-35 GCL1 GCR2-like 1 (.1) AT4G17030 118 / 1e-30 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033700 [exp] 454 / 4e-160 AT1G65680 233 / 2e-75 expansin B2 (.1) Lus10033701 [exp] 316 / 2e-104 AT2G20770 587 / 0.0 GCR2-like 2 (.1) Lus10020719 [exp] 224 / 8e-69 AT1G52920 578 / 0.0 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) Lus10036066 [exp] 207 / 2e-64 AT1G65680 286 / 1e-97 expansin B2 (.1) Lus10038933 [exp] 199 / 7e-61 AT1G65680 301 / 1e-102 expansin B2 (.1) Lus10018583 [exp] 160 / 6e-46 AT4G28250 398 / 1e-141 expansin B3 (.1.2) Lus10039816 [exp] 159 / 2e-45 AT4G28250 402 / 3e-143 expansin B3 (.1.2) Lus10040149 [exp] 125 / 3e-33 AT4G17030 221 / 2e-72 expansin-like B1 (.1) Lus10000957 [exp] 124 / 1e-32 AT4G17030 226 / 2e-74 expansin-like B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G134700 [exp] 256 / 2e-81 AT2G20770 605 / 0.0 GCR2-like 2 (.1) Potri.001G403200 [exp] 239 / 1e-74 AT1G52920 601 / 0.0 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) Potri.014G066300 [exp] 218 / 2e-68 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.013G134300 [exp] 162 / 6e-47 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 159 / 1e-45 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.005G072500 [exp] 144 / 1e-38 AT5G65280 586 / 0.0 GCR2-like 1 (.1) Potri.007G096500 [exp] 142 / 6e-38 AT5G65280 553 / 0.0 GCR2-like 1 (.1) Potri.001G151500 [exp] 115 / 2e-29 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.003G083200 [exp] 112 / 3e-28 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.003G087000 [exp] 107 / 2e-26 AT4G17030 183 / 3e-57 expansin-like B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0059 [flax] [poplar] 6_Hairpin PF05147 [flax] [poplar] LANC_like Lanthionine synthetase C-like protein CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10031638 pacid=23156034 polypeptide=Lus10031638 locus=Lus10031638.g ID=Lus10031638.BGIv1.0 annot-version=v1.0 ATGGCTCCTCTGATGCTTCGAAGATCATGGTCGCCGCCATTGATGATCGCTGTGCTTCTTGTTCAGCTTCTTTCTTCTTTCAATTACTGTTCATCTACTC ATAATAACGACACCCAGTATCTACATGCAGTGGCCACCTGGTACGGCCCTCCCACCGGCGCCGGAAGCACCGGTGGGGCATGCGGGTATTGTGAGTCGGT GGAGAAGCCGCCGTTGCACAAGTTGATCGCCGCCGGAGGGGATGCGTTTTACAAGTCAGGGAAAGGTTGTGGAGCTTGCTATAAGGTGAAATGCAAATCC CATCCAGATTGTTCCAGAAAGCCCGTCCATATCGTCATCACCGACCAGTGCCCCGGCACCAACGAACATTTCGACCTTAGCGGCCACGCTTTCGGAGCCA TGGCCATCCCCGGCAAGGAAGAGTCCCTCCGTCACGCCGGAAAGTTAGACGTCAAATATAGAAGATTTCCATGCAAGTATAAGGAGACTCCGGTGAAGTT CCACGTGGACGCGGGTTCGAACCCGCACTATCTAGCGGTCATGATCGAGTTCCTCGAGGGTGACGTCACACTTTGCTTGGTGGAGCTAAAAGCGGCGAAT TCGAACGAGTGGATACAAATGCAGCCGTCGTGGGGAGCTCTTTGGAAACACGATTGCAGCTCCCCACTCGAAGGTCCGGTATGTTTCCGGCTGACTTCCG GCGAGACCAAACAAGTCACCGTCTTCAATGATATCCTTCCCAAGGGCTGGACAGCCGGCAAAGATTATCATGCGTCTCCTCTACATGACTGTCACCTAAG GGATACCTTGTATTACATGATCAAGAATCGGCTTCCAAGTAAGAACTATCCGTCAAGTGAGGAAGATAGCAGCAGGGATGTTCTTGTGCATTGGTGTCAT GGTGCTCCAGGGATTGCCCTTACTTTTATTAAAGCTGCTAAGGTTTTTGGATATACAGATTTCTTGGAAGCGGCCATGGATGCAGCGGATATAATATGGA ACCGGGGTCTCCTAAAGCGACTTGGGATTTGCCACGACATTAGTGGGAACGCGTATGCTTTCCTCTCGTTATACCGGATGGCAGGCAACCACGAGTTCAT ATACAGAGGCAAAGCATTCGCTTGCTTTCTACTCGACAGAGCTCACAAACTCACATCAGAAGGAGAAATGCAAGGAGGCGATAGCCCTCACCCGCTTTTC GAAGGCGTTGGAGGTATGGCCTATCTACATCTAGATATGATTGATCCACTCAAATCCAGATTCCCTGCTTACGAACTTGATTGA
AA sequence Show only first row Show all	>Lus10031638 pacid=23156034 polypeptide=Lus10031638 locus=Lus10031638.g ID=Lus10031638.BGIv1.0 annot-version=v1.0 MAPLMLRRSWSPPLMIAVLLVQLLSSFNYCSSTHNNDTQYLHAVATWYGPPTGAGSTGGACGYCESVEKPPLHKLIAAGGDAFYKSGKGCGACYKVKCKS HPDCSRKPVHIVITDQCPGTNEHFDLSGHAFGAMAIPGKEESLRHAGKLDVKYRRFPCKYKETPVKFHVDAGSNPHYLAVMIEFLEGDVTLCLVELKAAN SNEWIQMQPSWGALWKHDCSSPLEGPVCFRLTSGETKQVTVFNDILPKGWTAGKDYHASPLHDCHLRDTLYYMIKNRLPSKNYPSSEEDSSRDVLVHWCH GAPGIALTFIKAAKVFGYTDFLEAAMDAADIIWNRGLLKRLGICHDISGNAYAFLSLYRMAGNHEFIYRGKAFACFLLDRAHKLTSEGEMQGGDSPHPLF EGVGGMAYLHLDMIDPLKSRFPAYELD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10031638 [exp]	0	1
AT4G19770			Glycosyl hydrolase family prot...		Lus10003408 [exp]	1.0	0.9252
AT3G44160			Outer membrane OMP85 family pr...		Lus10004104 [exp]	6.0	0.9047
AT3G55210	NAC	ANAC063	NAC domain containing protein ...		Lus10031639 [exp]	9.0	0.8434
AT1G72200			RING/U-box superfamily protein...		Lus10041134 [exp]	9.6	0.7627
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10012448 [exp]	10.2	0.7891
					Lus10021851 [exp]	12.2	0.8165
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	13.6	0.8165
					Lus10008791 [exp]	14.9	0.8165
					Lus10012440 [exp]	16.1	0.8165
					Lus10031183 [exp]	17.4	0.8091

Compare expression of checked genes

Lus10031638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.