Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24590 48 / 1e-05 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT3G55210 47 / 1e-05 NAC ANAC063 NAC domain containing protein 63 (.1) AT5G46590 47 / 2e-05 NAC ANAC096 NAC domain containing protein 96 (.1) AT3G56530 47 / 2e-05 NAC ANAC064 NAC domain containing protein 64 (.1) AT3G04060 46 / 3e-05 NAC ANAC046 NAC domain containing protein 46 (.1) AT3G10480 46 / 6e-05 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT3G17730 45 / 7e-05 NAC ANAC057 NAC domain containing protein 57 (.1) AT3G49530 45 / 0.0001 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT3G10490 45 / 0.0001 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT2G33480 44 / 0.0001 NAC ANAC041 NAC domain containing protein 41 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033699 [exp] 613 / 0 AT3G04060 49 / 6e-06 NAC domain containing protein 46 (.1) Lus10031595 [exp] 364 / 1e-125 ND / Lus10010294 [exp] 253 / 4e-79 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10009858 [exp] 249 / 4e-78 AT5G62380 53 / 1e-07 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10025078 [exp] 136 / 1e-34 AT1G79580 69 / 1e-12 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10024006 [exp] 134 / 1e-33 AT1G79580 75 / 3e-14 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10033676 [exp] 115 / 1e-27 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10008200 [exp] 100 / 5e-24 ND 43 / 6e-05 Lus10008240 [exp] 100 / 4e-23 AT1G33060 50 / 1e-06 NAC 014 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G028700 [exp] 113 / 9e-28 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G028300 [exp] 108 / 1e-25 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G029200 [exp] 92 / 3e-21 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.016G027900 [exp] 93 / 1e-20 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G028900 [exp] 87 / 7e-19 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.015G002900 [exp] 87 / 3e-18 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.019G063000 [exp] 79 / 2e-16 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.006G231300 [exp] 70 / 1e-12 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.014G163600 [exp] 66 / 2e-11 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.001G220500 [exp] 65 / 4e-11 AT1G77450 66 / 4e-12 NAC domain containing protein 32 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10031639 pacid=23155953 polypeptide=Lus10031639 locus=Lus10031639.g ID=Lus10031639.BGIv1.0 annot-version=v1.0 ATGGCCATCGCTCCGATCATCGTCAGCGATTCCCTCTTCTTGCTGCCGGCCGCGGCTAAATTCATCCCCACGGATACAGAATTAGTCCAACACTATCTCT ACAACTACATCCAGGGACACATGACTCCCGAGCAGTGCTACCCGGTACAAGAATCCGATCTGTACTGCGAAAAGGAGCCATGGGAGCTGTGGAGAGATCA CCAAATCAGGTCCCACCGGGAGCCGGACGAAGCCGTTTACCTCTTCACCAAGCTGAAGAAGAAGTCCAAGAACGCCAAGTACTTCGAGCGGAGGATCGGG AATTGCGGCGGGAGCTGGCACGGAGAGGATTCGGGGAACGTGTTCGTGAAATTCAGAGGCGGAGACGGATCGATGTGGGCCGGGAAGAAGAGGAAGTTCA AGTACGATAATACGAAATCGGAGGCGGAGCATGGAAAGTGGCTACTGTACGAGTTTCGACTCGAGAATGTCGAGAGTAAGAGTTCGTTCGAAACGGCGGT ATGTATGCTGAAGATGAACGGATCTCCGTTCGCCGAGAAGGAATTGGGTAAGATGATGACCAGGAAGAGGAAGCTTGACGATATATTGGGTGATATTCTT CATCAGGAATTGGAATTCCCTGGCCCTGCTCTTAAGAAGTTACAACTTGATCGGAAGCAGAGCAATTCCGTTGATATTGCCGTTCCGATTGTAATTCAGA ATGAAACGGCTGCGTTTCAAGCCTCTGTGAAGGATACGACGGCGGTTCCTGCGTTTCAGAATGAAACGATGCCGTTTATTGACGTTCTGGATAAAGATCC GAATTCGGAAAGATTCACCTTCACTTTGGAAGAGCTGTTTGGGGGTGGGAGTGAACCAGAGAAGACGGAGGAATCATCCGTTGAAGTTGCTGTTCCATTG ATTCCCACCGAGATCGACTCCGAAACGACACCGTATGAGACGGAGCAAGAAACGGTGTCATTGGAGGTCGATCCTGACGTTTCAGAGTTGGGAGACTTTG CCCTTATTTTGGCAGAGGAATTGGAAAGCAGCAGTGAATTACCAGAGGCAGTTGGTGGTGATGTTCATAATATTGCCAATGTCAATGAAGAAGAAGAAGC ACCGAAGAATGACGGGTCAATTAAGAGTAAGACGGATACAGAGGGGCCTCGAATTGGTGATGATCAACCTGCGATCAGTACCGGTAAGGATGGAGCATTC AACGGGGGAGAGGCGGAGGAGCTGGTGCAAATGCGAGATTGCGAAGGTGTTTCGACGAAGATGGTACAACAGCAGCAACCATGGAGTTCATGGAGTTTGC CCCAATGGCTACTGGACTACAGTGAGGATGAGGAAGATAGTAATGACTATATTCCTATAGATAATATTTGGGATTTTGATGATTTGTTACCACTTCCTTC TTCTTATGTAAGTTCTAATCATGTTTAA
AA sequence Show only first row Show all	>Lus10031639 pacid=23155953 polypeptide=Lus10031639 locus=Lus10031639.g ID=Lus10031639.BGIv1.0 annot-version=v1.0 MAIAPIIVSDSLFLLPAAAKFIPTDTELVQHYLYNYIQGHMTPEQCYPVQESDLYCEKEPWELWRDHQIRSHREPDEAVYLFTKLKKKSKNAKYFERRIG NCGGSWHGEDSGNVFVKFRGGDGSMWAGKKRKFKYDNTKSEAEHGKWLLYEFRLENVESKSSFETAVCMLKMNGSPFAEKELGKMMTRKRKLDDILGDIL HQELEFPGPALKKLQLDRKQSNSVDIAVPIVIQNETAAFQASVKDTTAVPAFQNETMPFIDVLDKDPNSERFTFTLEELFGGGSEPEKTEESSVEVAVPL IPTEIDSETTPYETEQETVSLEVDPDVSELGDFALILAEELESSSELPEAVGGDVHNIANVNEEEEAPKNDGSIKSKTDTEGPRIGDDQPAISTGKDGAF NGGEAEELVQMRDCEGVSTKMVQQQQPWSSWSLPQWLLDYSEDEEDSNDYIPIDNIWDFDDLLPLPSSYVSSNHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55210	NAC	ANAC063	NAC domain containing protein ...		Lus10031639 [exp]	0	1
AT5G02920			F-box/RNI-like superfamily pro...		Lus10035325 [exp]	3.3	0.9722
AT4G01310			Ribosomal L5P family protein (...		Lus10036391 [exp]	4.9	0.9654
					Lus10021851 [exp]	6.5	0.9593
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	7.5	0.9593
					Lus10008791 [exp]	8.4	0.9593
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10031638 [exp]	9.0	0.8434
					Lus10012440 [exp]	9.2	0.9593
AT2G20030			RING/U-box superfamily protein...		Lus10000885 [exp]	9.6	0.8914
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	9.9	0.9550
					Lus10026713 [exp]	10.6	0.9546

Compare expression of checked genes

Lus10031639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.