Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20710 48 / 2e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012112 [exp] 41 / 0.0006 AT1G80270 659 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10033698 [exp] 0 / 1 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063400 [exp] 59 / 3e-10 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G051700 [exp] 53 / 2e-08 AT2G20710 151 / 1e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063300 [exp] 47 / 5e-06 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G036100 [exp] 42 / 0.0003 AT1G80270 634 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.006G039600 [exp] 40 / 0.0006 AT1G80270 654 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.013G132700 [exp] 0 / 1 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132500 [exp] 0 / 1 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031640 pacid=23155922 polypeptide=Lus10031640 locus=Lus10031640.g ID=Lus10031640.BGIv1.0 annot-version=v1.0 ATGGGATTTGTACAAGAGCATCGGGAAGATGTTCAACTCGGGGTATCTGTGCATGATAAGCTCGCTCGTGAAGCTAAAAAATCTCGATGGCGCCGAGAAA AAATGGGAGGAATGGTTATCAAAGAAGACATTCCAGGATATTCGGATACTGAATCAGATGGTCATCGGTTTCTCGAGGAAAGGTATTTGGGAAAAGGCAG AGGTATGCGTGAACAAAGTAGCAGAGGGAGGCGGGAAACCGATCCGATCACATGGAGCTGTTTGTCGGTAGGGTATTGTGTCGGTGGGGAGACTGAGAAG GCGGTAGAGACGGTGAAGAAAGCTGTCTCGGATAGTCCAAGTAAGCTGGGTGGACCTAAGTTGAAGCCTGAGATTCGTACCGTGGCAGCTTGTATCAAGC ATTTGAAAGGTAAAGGTGAGATGGAAGCAGCGGAAGAAATACTGGAGAGGATTAGAAAGAACTGTCACTTTCCTGCTACTGCTTTGGATAAGTTGGAAGG TTATTTGAAAGACGAGAACCGGAATGACAGAGCTCTTGACGAGGAGGATGCCGATGATCTGAGCCTCGACGATGAAGAAACACCGGAGCCGTGGAGTTCA AGTGCTGCTGGAGCAACATCAGCATCAGCATCAAATTGA
AA sequence Show only first row Show all	>Lus10031640 pacid=23155922 polypeptide=Lus10031640 locus=Lus10031640.g ID=Lus10031640.BGIv1.0 annot-version=v1.0 MGFVQEHREDVQLGVSVHDKLAREAKKSRWRREKMGGMVIKEDIPGYSDTESDGHRFLEERYLGKGRGMREQSSRGRRETDPITWSCLSVGYCVGGETEK AVETVKKAVSDSPSKLGGPKLKPEIRTVAACIKHLKGKGEMEAAEEILERIRKNCHFPATALDKLEGYLKDENRNDRALDEEDADDLSLDDEETPEPWSS SAAGATSASASN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10031640 [exp]	0	1
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10025511 [exp]	1.7	0.9093
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10009564 [exp]	5.0	0.8919
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Lus10024667 [exp]	9.9	0.8953
AT2G45040			Matrixin family protein (.1)		Lus10028180 [exp]	9.9	0.8880
AT5G47810		PFK2	phosphofructokinase 2 (.1)		Lus10008812 [exp]	10.4	0.8857
AT5G17600			RING/U-box superfamily protein...		Lus10013618 [exp]	11.2	0.8785
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10028866 [exp]	11.7	0.8867
AT3G15480			Protein of unknown function (D...		Lus10043091 [exp]	13.0	0.8961
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10001419 [exp]	13.9	0.8818
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10024422 [exp]	14.5	0.8827

Compare expression of checked genes

Lus10031640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.