Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28300 241 / 7e-74 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) AT5G14540 91 / 4e-19 Protein of unknown function (DUF1421) (.1) AT3G01560 80 / 8e-16 Protein of unknown function (DUF1421) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033692 [exp] 550 / 0 AT4G28300 392 / 1e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10039827 [exp] 295 / 5e-94 AT4G28300 377 / 9e-126 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10018593 [exp] 284 / 6e-90 AT4G28300 376 / 1e-125 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10032138 [exp] 90 / 8e-19 AT5G14540 204 / 4e-58 Protein of unknown function (DUF1421) (.1) Lus10014549 [exp] 89 / 2e-18 AT5G14540 207 / 2e-59 Protein of unknown function (DUF1421) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G095400 [exp] 248 / 6e-76 AT4G28300 261 / 5e-81 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Potri.013G131600 [exp] 239 / 1e-72 AT4G28300 284 / 1e-89 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Potri.001G348500 [exp] 82 / 3e-16 AT5G14540 185 / 1e-51 Protein of unknown function (DUF1421) (.1) Potri.012G083200 [exp] 76 / 2e-14 AT5G14540 147 / 3e-38 Protein of unknown function (DUF1421) (.1) Potri.T125008 [exp] 71 / 5e-13 AT5G14540 142 / 2e-36 Protein of unknown function (DUF1421) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF07223 [flax] [poplar] DUF1421 UBA-like domain (DUF1421)
Representative CDS sequence Show only first row Show all	>Lus10031645 pacid=23155830 polypeptide=Lus10031645 locus=Lus10031645.g ID=Lus10031645.BGIv1.0 annot-version=v1.0 ATGGCGTCCGGATCGTCGTCGGGCCGACCCAGCTCCGGCTCCAAGGGCTTCGATTTCGGGTCAGATGATATCCTCTGCTCCTACGACGACTTCCCCAATC AGGACTCCTCCAACGGAACCCATTCCGATCCAATCCCATCATCCACTCCCTCCAAGGGTTTTGAGAAGAGCCGGATGTCAAGATCGTCCGGGTATCAGGC TGCTTCCTATGGCCAACCTGACGATTCCTTCCACCAAGAAGTGATCTCTGTAGTGGAGAGGGGTATGAAAAGGCATTCTGATAACATGATGCGTTTCCTC GAGGGAATCAGTTCCCGCCTTTCCCAGTTGGAGTTGTATTGCTATAATCTCGATAAGTCGATTGGAGAGATGCGATCTGATTTGACTCGCGACCATGCTG AGACGGATACAAAGCTCAAAGCTGTGGAGAAAAATCTTCAAGAGGTTCATAGATCAGTCCAGATACTAAGGGATAAGCAAGAACTTGCCGATACTCAGAA AGAACTTGCAAAGCTTCAGCTCGTGCATAAGGATTCCTCTTCGTCAACACATTCACAATCTAACGAAGAAAAAGGTGCACCACCTGTTGCTGATCCGAAA ATCAACGACAACAACTCCGAAACACATAACCAGCAACTGGCTCTTGCTCTCCCACCACAACAGGTTGTTCCTCAGCAGCAACAGATTTCTGTCCCGCCAC CTTCCCAAACGCCCCAACAGAACATAGCACCACCACAACCTCAACCTCAGACTTATTACTTACCGCCATCCCAGTCGCAGACCCCTCAGAATCAATACAT GCCTCCAGATTCTCAGTACAGACCAAACCAAGTGCCGGGACAAGCAACTCAAGCACCACTGTCATCCAGCCAGCAATATCCTCAGTACCAGCAGCAGTGG GCTCAGCAAGTACAGCTACAACAAACTCAACAGCCAACAATGCCGAGTCAAGTCAGGCCGGCATCAAATCAAGTTTACCCTCCTCCCTATCCCCCACCCG GTCAGCCAGCCGGTCCTGGTCCCCAAGAGACGTTGTCAAGCAGCATGCCTATGCCGGCATCATATTCCCCGGTTCCTCAGCCTTCATATGGGTACGGGTC CCCGAGACCTATTCCCCAGCAGCAGCTTCCACCTCAGCCTTCATACATGATGTACGAGGGAGAAGGAGGGAGAGCTCACCATTCAGCCCAGGCTCCTCAT TTTTCGCAAGGCGGATACGCTCCATCGAGCGTCTCTCACCAGCGTTCGCAACCAGGTCCCGCAGCTCCGAACATGATGCCTAGAAATCCCGGCCAGCCCC AGTTCATCCGGAACCATCCTTACAGTGAGTTGGTTGAGAAGCTGGTCAACATGGGATTCAGAGGGGATCATGTGATGAGTGTGATTCAGAGGATGGAGGA ATCCGGGCAGCCCGTGGATTTCAATGCAGTGCTTGACAGGTTGAATGTGCACTCCTCCGGAAGCCCGCAGAGTGGGTGGTCGGGTTAA
AA sequence Show only first row Show all	>Lus10031645 pacid=23155830 polypeptide=Lus10031645 locus=Lus10031645.g ID=Lus10031645.BGIv1.0 annot-version=v1.0 MASGSSSGRPSSGSKGFDFGSDDILCSYDDFPNQDSSNGTHSDPIPSSTPSKGFEKSRMSRSSGYQAASYGQPDDSFHQEVISVVERGMKRHSDNMMRFL EGISSRLSQLELYCYNLDKSIGEMRSDLTRDHAETDTKLKAVEKNLQEVHRSVQILRDKQELADTQKELAKLQLVHKDSSSSTHSQSNEEKGAPPVADPK INDNNSETHNQQLALALPPQQVVPQQQQISVPPPSQTPQQNIAPPQPQPQTYYLPPSQSQTPQNQYMPPDSQYRPNQVPGQATQAPLSSSQQYPQYQQQW AQQVQLQQTQQPTMPSQVRPASNQVYPPPYPPPGQPAGPGPQETLSSSMPMPASYSPVPQPSYGYGSPRPIPQQQLPPQPSYMMYEGEGGRAHHSAQAPH FSQGGYAPSSVSHQRSQPGPAAPNMMPRNPGQPQFIRNHPYSELVEKLVNMGFRGDHVMSVIQRMEESGQPVDFNAVLDRLNVHSSGSPQSGWSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28300			Protein of unknown function (D...		Lus10031645 [exp]	0	1
AT1G71980			Protease-associated (PA) RING/...		Lus10006074 [exp]	2.0	0.8717
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	2.4	0.9044
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10012999 [exp]	3.0	0.8905
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10013493 [exp]	3.2	0.8578
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10001519 [exp]	7.9	0.8914
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10007433 [exp]	8.8	0.8659
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	14.1	0.8716
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10032116 [exp]	14.1	0.8611
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10034148 [exp]	14.7	0.8412
AT3G19910			RING/U-box superfamily protein...		Lus10010182 [exp]	16.2	0.8580

Compare expression of checked genes

Lus10031645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.