Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55870 613 / 0 ATPARN, AHG2 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT3G25430 173 / 3e-46 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033691 [exp] 1115 / 0 AT1G55870 713 / 0.0 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Lus10009563 [exp] 167 / 3e-44 AT3G25430 578 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10020388 [exp] 160 / 7e-42 AT3G25430 565 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G368401 [exp] 658 / 0 AT1G55870 685 / 0.0 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Potri.014G018500 [exp] 176 / 2e-47 AT3G25430 662 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.014G177400 [exp] 175 / 4e-47 AT3G25430 667 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10031646 pacid=23156009 polypeptide=Lus10031646 locus=Lus10031646.g ID=Lus10031646.BGIv1.0 annot-version=v1.0 ATGAGCAAGAAACAATGGCTGCCTCGGTTATGGCGTACCTTCTCACGCGCCAATTCCTCCTCGCCCACCACGTCTTCGTTCCCTCTAAAGCATGTCACCA AGTCCAACTTCGAATCCTCGCTCGCCGAGCTCAGAACTCACGTCAGCGCCGCCGATTTCGTAGCCATCGATTTGGAGATGACCGGCGTTACCACATCCGC CTGGAGGGAGTCCTTCGAGCTCGACAGCTCCGATGTTAGGTATAATTTCTTCATATTCCCTCGCGAAGAGATTCAATATACTGGCCCTTCCCATGAGTTC CTCTGCCAGACATCGTCGCTGGATTTCCTGGCCAAGTATCAGTTTGATTTCAATACCTGTATTCGTGAAGGGATATCTTATTTATCCAGAGGACAAGAAG ATGAAGCATTGTGTCGCTTGGCTCAACAATACGAGAGGTTATCAGACTTCTCCAACAGCTCAGAGGATAGAGACATGCCACCGTTTGTCAACTTCACTGA TGTTCTCTTCAGTGAGCGAATGAAGAACAAATTGAGCGGGTGGCATACCAGGTTGTTGCACGGCACAGATAGTGCTTCTGATTGTCAAGATTCGTCGAAA GATTCTAAAGAGCAGTTTCAGACTGTCTTCTTCAAGCTTCGTCCGGCTGTTTCTCTCAGTGGTTTCACCTCACATCAGCTTAATTTGATTCGGATGGTCA CCAAGAAACATTTCAAAGATCTTGTTCATGTCCGCATCAGTGGGGAAAACTCAAGTTCAGAACAACTGGTCGTCTATACAGACACAGAGAATGATAAAGC CTTATTATTGACAGAGGTGAAGAATGCGTATCTTGGAGAGGTAGAGAAGAAGATCAAAGCTGCAATCGGGTTCCGCCATGTGATAGACCTTCTTTCTTCT GAAAAGAAGTTGATCGTAGGCCACAATTGCTTCTTGGATATTGCACATGTACACAAAAAGTTCTTGGGTCCTCTCCCTGGCACTGCTGAAGAATTTGTTT CGTCATTCAATAAGCATTTCCCGTACATAGTTGATACCAAGATTCTTTTGAATTCGAGCGGCATACTGCAAAGAATAATGAACAAGTCGAGCACCTCGCT CTCCAAAGCATATCTTTTACTTTGTAAGCAGATTACGTTGGGCGCTGAGAAAGCATCTGACAACTTGGGTTATTATCCAAGTGTCAAAATCGAAGTTGAA ATGGATGATATAAGGTCGACAGACTGGACATCAGGAGCCAAACACGAAGCTGGATATGATGCCTTTATGACAGGATGCGTATTTGCTCAGTCCTGCAATT ATCTCGGCATTGATTTCAAGCAACATTCGCCTCCCCTGAACTTAGCTCTTGATCAAAAACTCGAAAAACACATCAACCACCTGTACTTGAGTTGGAATAA CGGAGACATTGTAGATTTAAGCACAGGAAAACAGATTCCGGCTGTTGGACTTGGAGCCAAGGGTCTGAGTAGACGATTCTCAAAGATAGAGTTTGAGAAT GTGGTTCTGATCTGGCGGTTCCCAACTAAACTCAAGGTAAAGGAGATAAAAGAGTGTATATGCAAAGTCTTTGGTGTAGCCTCCGTAGCATCCATCTTTC AGGTGGATGAAAGTGCAGTTCTTGTTCATTTCAACAAGCCGGAGTTGGTTTCCGAGTTTCTACTTCTGAAAGAAACATTGGAAAAGAGCGACGGTGCCTT GTCAGCTTTGAATCCTCTGTCGAGTCTTCTGGAAGGCGGAAGGACACGCGCAGCTGGTTATCAAACATATAAGGAGATATGTAGGTCGCCGGGTTCTCAA GTTCTGCTTGCAGATGCAGCTGATGATGCCATGTCCCGGAACCTACTTGACCAGTAG
AA sequence Show only first row Show all	>Lus10031646 pacid=23156009 polypeptide=Lus10031646 locus=Lus10031646.g ID=Lus10031646.BGIv1.0 annot-version=v1.0 MSKKQWLPRLWRTFSRANSSSPTTSSFPLKHVTKSNFESSLAELRTHVSAADFVAIDLEMTGVTTSAWRESFELDSSDVRYNFFIFPREEIQYTGPSHEF LCQTSSLDFLAKYQFDFNTCIREGISYLSRGQEDEALCRLAQQYERLSDFSNSSEDRDMPPFVNFTDVLFSERMKNKLSGWHTRLLHGTDSASDCQDSSK DSKEQFQTVFFKLRPAVSLSGFTSHQLNLIRMVTKKHFKDLVHVRISGENSSSEQLVVYTDTENDKALLLTEVKNAYLGEVEKKIKAAIGFRHVIDLLSS EKKLIVGHNCFLDIAHVHKKFLGPLPGTAEEFVSSFNKHFPYIVDTKILLNSSGILQRIMNKSSTSLSKAYLLLCKQITLGAEKASDNLGYYPSVKIEVE MDDIRSTDWTSGAKHEAGYDAFMTGCVFAQSCNYLGIDFKQHSPPLNLALDQKLEKHINHLYLSWNNGDIVDLSTGKQIPAVGLGAKGLSRRFSKIEFEN VVLIWRFPTKLKVKEIKECICKVFGVASVASIFQVDESAVLVHFNKPELVSEFLLLKETLEKSDGALSALNPLSSLLEGGRTRAAGYQTYKEICRSPGSQ VLLADAADDAMSRNLLDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55870		ATPARN, AHG2	ARABIDOPSIS THALIANA POLY\(A\)...		Lus10031646 [exp]	0	1
AT4G11970			YTH family protein (.1.2.3)		Lus10006706 [exp]	15.7	0.8321
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10029910 [exp]	25.5	0.8251
AT2G46050			Pentatricopeptide repeat (PPR-...		Lus10036375 [exp]	36.9	0.8110
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10020879 [exp]	63.6	0.8002
AT1G42440			unknown protein		Lus10030752 [exp]	69.8	0.7991
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10004303 [exp]	72.5	0.7913
AT4G11970			YTH family protein (.1.2.3)		Lus10007048 [exp]	76.8	0.7945
AT1G17450			B-block binding subunit of TFI...		Lus10037675 [exp]	85.0	0.7891
AT3G61170			Tetratricopeptide repeat (TPR)...		Lus10024936 [exp]	85.5	0.7893
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10025532 [exp]	99.3	0.7832

Compare expression of checked genes

Lus10031646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.