Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32490 1461 / 0 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT2G35340 1425 / 0 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT3G26560 756 / 0 ATP-dependent RNA helicase, putative (.1) AT4G16680 684 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G13010 663 / 0 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT3G62310 657 / 0 RNA helicase family protein (.1) AT2G47250 656 / 0 RNA helicase family protein (.1) AT4G18465 603 / 0 RNA helicase family protein (.1) AT1G26370 538 / 2e-177 RID1 RNA helicase family protein (.1) AT1G27900 512 / 1e-167 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033690 [exp] 1515 / 0 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10036783 [exp] 760 / 0 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10037145 [exp] 656 / 0 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10005261 [exp] 639 / 0 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10025127 [exp] 530 / 8e-175 AT4G18465 1033 / 0.0 RNA helicase family protein (.1) Lus10037067 [exp] 514 / 3e-168 AT1G26370 927 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 512 / 1e-167 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10036991 [exp] 507 / 1e-165 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10009600 [exp] 431 / 2e-139 AT5G13010 907 / 0.0 embryo defective 3011, RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G008700 [exp] 1541 / 0 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.015G024400 [exp] 760 / 0 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.012G034200 [exp] 755 / 0 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.010G172500 [exp] 665 / 0 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.014G117900 [exp] 657 / 0 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 657 / 0 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 601 / 0 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 546 / 2e-180 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 505 / 6e-165 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.005G071500 [exp] 349 / 5e-100 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10031647 pacid=23155948 polypeptide=Lus10031647 locus=Lus10031647.g ID=Lus10031647.BGIv1.0 annot-version=v1.0 ATGGGTGATGCGAATTTGAAGACATGGGTGTCTGATAAGCTCATATCTATATTGGGATACTCGCAAGGCGCAATTGTTCAGTACATCATCGGACTAGCTA AAGAAGCAAAATCCCCAGCCGATATTGTTGGGAAGTTGGAAGAGTTGAATTGTCCATCGTCAGCAAAAACACGCTCATTTGCTGAAGAAATTTTTGAAAA AGTTCCGCGGAAAGCTTCCGGTTTAAATGACTACCAAAAACGGGAGAGGGAAGCTGCAAACTTGGCCAAAAAGCAGAAGATGTATAAGCTCCTGGACGCT GATGATGATGAAGATGACGATCATGGTGCTAGTAATGCTACTGCTATAACAAATGTACCGACTTCGGAGACCAAAAGGGCAGATAGGAAACGATTCAGGA AAAAAACTGAAAACGATGAGGATGAGGACGAAGATAGCGAGGCATGTTGTTTTTTTTCTGATAGGCTGGTTAAGAGACGAACTTCTAATGACAAAGATGA TGGTTCTGAGTCGGATGAAGAAATATTGCGTGATCAAATGGAACGCGAGCAATTGGAGCAAAATATGAGAGAACGTGATGCTGCAGCAACTAAAAAGTCG GATGAAGAAATATTGCGTGATCAAATGGAACGCGAGCAATTGGAGCAAAATATGAGAGAACGTGATGCTGCAGCAACTAAAAAGTTGGCAGAGCGAAAAG TATCAAAGAAGGAGGAAGATGAGAGGATCCGAAGAACGAATGTTTTGGAGAACGATGGCATTGATACATTAAGAAAGATGTCCAGACGAGAGTATCTACC GTACACAAATGAGAGGATCCGAAGAACGAATGTTTTGGAGAACGATGGCATTGATACATTAAGAAAGTTGTCCAGACGAGAGTATCTAAAGAAGAGGGAG GAAAAGAAAGTAGAAGAACTCAGGGATGATATAATAGATGAGGATTATCTTTTTAAAGATGAGAAGCTCACTGAAGTTGAACTTCGTGAATTAAGCTACA AGAAGGCAATAGCAGAGCTTTTGAACAAGTCACGAGAAGTTGATGACACACAAGAGTATAGGATGCCAGATGCATATGATCAAGACGGTGGAGTTAACCA AGAGAAAAGATTTTCTGTTGCTGAACAACGCTATGGAGATGGTAGTGCTGCAGAAAAGATGAACCCGTTTGCGGAGCAGGAGGCTTGGGAAGATCATCAA ATTGGGAAAGCAACACTGAAATTCGGTTCAAGGAACAAAAAGCAGACTTCTGATGCTTATCAGTTTGTATTTGAGGACCAGATTGATTTTATCAAGGAAT CAGTAATGGATGGTGACAAGTTTGACAATGATCTCTCTCCAGAGGCGCTTGAGGAACTGGAGACAAAAACTGGTTTTGAGAAGCTTCAGGCGGACAGAAA AACCTTACCCATGTATCAATATCGAGAAGAACTACTTGAAGCTATCGGAAAATATCAGGTTCTTGTTATTGTTGGAGAGACGGGTTCTGGGAAGACTACT CAGATACCCCAATATCTTCATGAAGCTGGATATACCAAGGCTGGAAAGGTTGGTTGTACTCAGCCAAGGCGAGTTGCCGCCATGAGTGTGGCAGCTAGGG TTTCTCAAGAGATGGGTGTCAAACTCGGCCATGAGGTTGGTTACTCTATCCGCTTTGAGGACTGCACATCAGACAAGACAATTATCAAGTACATGACAGA TGGAATGCTGCTGCGGGAATTCCTTGGTGAACCCGATTTGGCTAGCTACAGCGTCATCATGGTGGATGAGGCACATGAAAGGACTTTGTCAACTGACATA CTGTTTGGATTGGATATATCACGTTTCCGGCCAGATTTGAAGCTCCTTATCTCAAGTGCAACTCTTGATGCTGAGAAATTCAGTGATTACTTTGATGCTG CTCCGATCTTCCGGATTCCTGGTAGGAGGTATCCCGTTCATATACACTACACCAAAGCCCCAGAAGCTGATTATCTGGATGCTGCAATTGTAACTGTACT TCAGATCCACGTGACAGAAGCACCTGGTGATATATTAGTCTTCTTTACTGGCCAAGAAGAAATAGAGACGGCTGAGGAAACTTTGAAACACAGGACAAAA GGTTTGGGAACTAAAATTCCCGAGCTCATTATTTGTCCTATATACGCCAACTTACCGACAGAGCTTCAGGCCAAAATATTTGAGCAAACCCCAGAAGGGG CTCGGAAGGTTGTCCTTGCAACAAATATAGCAGAAACATCTCTGACAATTGACGGTATCAAATATGTTATCGATCCTGGATTTTGCAAGATGAAATCGTA CAATCCAAGAACCGGAATGGAGTCCTTGCTCGTGACTCCCATATCAAAGGCTTCAGCCAATCAACGTGCTGGTCGTTCCGGTCGGACAGGTCCAGGGAAG TGCTATAGGTTGTACACTGCCTACAATTTTAATCACGACTTGGACGAAAATACGATACCTGAAATACAGAGGACTAATCTGGCTAGTGTTGTGCTGTCCT TGAAGAGTCTTGGAATTCACGATTTGTTAAATTTTGATTTTATGGATCCACCACCTTCCGAGGCTTTATTAAAGGCGTTGGAGCTGCTCTTTGCTCTAAG TGCTTTGAACAAACATGGTGAGCTGACTAAGGTCGGTAGGAGGATGGCCGAGTTTCCTCTTGATCCTATGTTGTCCAAGATGATAGTTGCTTCCGACAAG TACAAATGCTCGGATGAGATCATCTCTATTGCTGCTATGTTGTCAGTTGGGAATTCGATCTTTTATCGGCCGAAGGACAAACAAGTTCATGCTGACAATG CCAGATTGAATTTCCACACAGGAAACGTAGGAGACCACATTGCTCTACTCAAGGTGTATAACTCCTGGAAAGAAACAAATTTCTCTACACAATGGTGTTA CGAAAATTACATTCAGGTTAGAAGTATGAAACGAGCTAGAGACATAAGAGATCAATTGGAAGGCCTTTTGGAGAGGGTAGAAATCGATATTACTGCCTGT CCCAATGATTTGGATGCAATAAAGAAGTCAATAACATCAGGTTTCTTTCCCCATTCTGCAAAGCTGCAAAAAAGTGGTGCTTACAAAACCGTGAAGCATC CTCAGACTGTTCATATTCATCCAAGCTCAGGGTTGGCTCAGGTGCTCCCAAGATGGGTCATATATCATGAGTTGGTGCTTACAACCAAAGAGTATATGAG ACAAGTGACAGAATTGAAGCCGGATTGGCTAGTAGAAATAGCTCCCCACTATTACCAGCACAAGGATGTGGATGATGGTGCGCTATCTCTCCCAATCCCG ATCTCTCTTTCCAATGGAGCTGTGCCCACTTCGAAGAAACTAGGAACGGTTACAAGCTTGCTCAAGCAGACTCTCCTTCCTGCGATAACACAAACAAGGT CGAGTTGCACCCTACCCACTTAG
AA sequence Show only first row Show all	>Lus10031647 pacid=23155948 polypeptide=Lus10031647 locus=Lus10031647.g ID=Lus10031647.BGIv1.0 annot-version=v1.0 MGDANLKTWVSDKLISILGYSQGAIVQYIIGLAKEAKSPADIVGKLEELNCPSSAKTRSFAEEIFEKVPRKASGLNDYQKREREAANLAKKQKMYKLLDA DDDEDDDHGASNATAITNVPTSETKRADRKRFRKKTENDEDEDEDSEACCFFSDRLVKRRTSNDKDDGSESDEEILRDQMEREQLEQNMRERDAAATKKS DEEILRDQMEREQLEQNMRERDAAATKKLAERKVSKKEEDERIRRTNVLENDGIDTLRKMSRREYLPYTNERIRRTNVLENDGIDTLRKLSRREYLKKRE EKKVEELRDDIIDEDYLFKDEKLTEVELRELSYKKAIAELLNKSREVDDTQEYRMPDAYDQDGGVNQEKRFSVAEQRYGDGSAAEKMNPFAEQEAWEDHQ IGKATLKFGSRNKKQTSDAYQFVFEDQIDFIKESVMDGDKFDNDLSPEALEELETKTGFEKLQADRKTLPMYQYREELLEAIGKYQVLVIVGETGSGKTT QIPQYLHEAGYTKAGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTIIKYMTDGMLLREFLGEPDLASYSVIMVDEAHERTLSTDI LFGLDISRFRPDLKLLISSATLDAEKFSDYFDAAPIFRIPGRRYPVHIHYTKAPEADYLDAAIVTVLQIHVTEAPGDILVFFTGQEEIETAEETLKHRTK GLGTKIPELIICPIYANLPTELQAKIFEQTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASANQRAGRSGRTGPGK CYRLYTAYNFNHDLDENTIPEIQRTNLASVVLSLKSLGIHDLLNFDFMDPPPSEALLKALELLFALSALNKHGELTKVGRRMAEFPLDPMLSKMIVASDK YKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLKVYNSWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIDITAC PNDLDAIKKSITSGFFPHSAKLQKSGAYKTVKHPQTVHIHPSSGLAQVLPRWVIYHELVLTTKEYMRQVTELKPDWLVEIAPHYYQHKDVDDGALSLPIP ISLSNGAVPTSKKLGTVTSLLKQTLLPAITQTRSSCTLPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10031647 [exp]	0	1
AT3G07610		IBM1	increase in bonsai methylation...		Lus10015260 [exp]	1.4	0.8857
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036277 [exp]	3.2	0.8645
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10025083 [exp]	4.9	0.8600
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	5.5	0.8695
AT3G46220			unknown protein		Lus10040874 [exp]	5.5	0.8503
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Lus10005032 [exp]	6.6	0.8763
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10014796 [exp]	8.0	0.8671
AT5G56730			Insulinase (Peptidase family M...		Lus10012918 [exp]	8.1	0.8485
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	8.4	0.8455
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	8.5	0.8400

Compare expression of checked genes

Lus10031647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.