Plant FIBer expression Database

Lus10031649 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28310 112 / 4e-31 unknown protein
AT1G52270 54 / 2e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033688
[exp]
290 / 1e-100 AT4G28310 156 / 3e-48 unknown protein
Lus10018597
[exp]
167 / 1e-52 AT4G28310 154 / 2e-47 unknown protein
Lus10039832
[exp]
154 / 3e-47 AT4G28310 156 / 2e-48 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G130700
[exp]
161 / 8e-50 AT4G28310 120 / 9e-34 unknown protein
PFAM info
Representative CDS sequence
>Lus10031649 pacid=23156037 polypeptide=Lus10031649 locus=Lus10031649.g ID=Lus10031649.BGIv1.0 annot-version=v1.0
ATGGTGGTGCCACTCGGTCCAGGGAAGTTCTACGGCAGCAGCCTCCCACGTCCGCGCTTCTACACCGATGTGACGTTAAACTCCGAACGGGTCGACCCGC
CGGTCTCCGTCATGGATCCTTTCCTGTCATGGGCAAGCGAGGCCCACTGGTCGATGGGTGGCCTCAACACCGAGCGCGTCAGATTCCAGGGTCGGATCGA
AGGGAACGCCGATAGGCTGCGCAAGTTTCGTGAGAAGCAGACCAAATTGCTGACCGGAATCACCCCGAGGAAGTCGGCAACAGATCCGGCGGATGAGAAG
AATAAGAAGAGATCTGGTTCGGTCTCTCCCCCTCCGGCTCCTAGAGTGGTGAAGAAGAGGAAGTCCATGGATCAGTTCGATGACGAGATTGAAAGCCGCG
AAGAAAAAGAGCAGACGAGGAAGTGGCCGGTGAGGAAATTGGTCGGCGAGTTTGAGAGGGTGGCTAAGGAATCAAACAAGGATTCCGTTGTTGAGGAGTT
GAACAAGAAGGGCTCTGATGGTAAGAAGTTGAAGAAGAGACTGAGGAAAGTTGGGGAAAATCCTGGTAGTGTTAGGACTTCACCAAGGTTGGCGAAGCAA
TGA
AA sequence
>Lus10031649 pacid=23156037 polypeptide=Lus10031649 locus=Lus10031649.g ID=Lus10031649.BGIv1.0 annot-version=v1.0
MVVPLGPGKFYGSSLPRPRFYTDVTLNSERVDPPVSVMDPFLSWASEAHWSMGGLNTERVRFQGRIEGNADRLRKFREKQTKLLTGITPRKSATDPADEK
NKKRSGSVSPPPAPRVVKKRKSMDQFDDEIESREEKEQTRKWPVRKLVGEFERVAKESNKDSVVEELNKKGSDGKKLKKRLRKVGENPGSVRTSPRLAKQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G28310 unknown protein Lus10031649
[exp]
0 1
AT4G28310 unknown protein Lus10018597
[exp]
1.0 0.9476
AT4G28310 unknown protein Lus10039832
[exp]
1.4 0.9219
AT3G08900 RGP3 reversibly glycosylated polype... Lus10004640
[exp]
5.3 0.8952
AT5G54970 unknown protein Lus10043108
[exp]
7.7 0.9018
AT3G56370 Leucine-rich repeat protein ki... Lus10025139
[exp]
10.7 0.8965
AT3G03220 ATHEXPALPHA1.22... EXPANSIN 13, expansin A13 (.1) Lus10027304
[exp]
11.5 0.8772
AT1G74050 Ribosomal protein L6 family pr... Lus10038775
[exp]
12.5 0.8958
AT2G24490 ATRPA32A, RPA2,... SUPPRESSOR OF ROS1, replicon p... Lus10026954
[exp]
13.5 0.9086
AT5G44500 Small nuclear ribonucleoprotei... Lus10038421
[exp]
13.7 0.8868
AT4G28310 unknown protein Lus10033688
[exp]
14.0 0.8273

Lus10031649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.