Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20680 655 / 0 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT4G28320 624 / 0 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT5G01930 404 / 2e-138 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT5G66460 371 / 1e-125 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT3G10900 345 / 6e-116 Glycosyl hydrolase superfamily protein (.1) AT3G10890 344 / 2e-115 Glycosyl hydrolase superfamily protein (.1) AT1G02310 333 / 5e-111 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT3G30540 258 / 7e-83 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033687 [exp] 891 / 0 AT2G20680 644 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10039833 [exp] 771 / 0 AT2G20680 633 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10018598 [exp] 759 / 0 AT2G20680 627 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10027329 [exp] 422 / 1e-145 AT2G20680 438 / 8e-152 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10039032 [exp] 418 / 9e-144 AT2G20680 433 / 8e-150 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 410 / 8e-141 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10014288 [exp] 385 / 3e-131 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10025995 [exp] 379 / 3e-125 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007900 [exp] 345 / 4e-115 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G130400 [exp] 714 / 0 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.006G009400 [exp] 424 / 8e-146 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 397 / 3e-135 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 396 / 3e-134 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.005G120500 [exp] 373 / 2e-126 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.007G022000 [exp] 367 / 5e-124 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 355 / 1e-119 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.002G184500 [exp] 326 / 3e-108 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 223 / 1e-70 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 208 / 2e-63 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10031650 pacid=23155996 polypeptide=Lus10031650 locus=Lus10031650.g ID=Lus10031650.BGIv1.0 annot-version=v1.0 ATGGGAGGGAACGGCGGTGGCCTGTTCATCCCAATTCTAGGTTTTGCTTCATGTGTGGCTTTCATTTACATGTCTCTTGGTGACCTATGGCCTGCTGCGT ATCCAGTGGAGCCTGCCTGGAGCTTTGTGCAGAGGAATGGGACTCGGTTTGTGCTGGATGGGAAGCCTTTCTATGTTAATGGGTGGAATTCGTATTGGTT GATGGACCATTCAGCTGATGACCAGAGGAAACACAAGTCTGCTAAAATGCTGGAGGCTGGTTCTAAGATGGGTCTCACTGTCTGTAGAACTTGGGCGTTC AATGATGGTGCTCATAATGCTCTACAGCTCTCTCCTGGCAGATTTGAGGAGAATGTTTTCAGGGCTTTAGATCATGTCATTGCTGAAGCAAGAACACATA AAGTGAGGCTGATTCTCAGTTTGGTTAATAACTTGCAAGCATACGGTGGGAAGGATCGGTATGTCAAGTGGGCATGGGAAGAAGGAATTGGTTTGAGCTC TTCCAACGATTCTTTCTTCTACGATCCATCCATCAAAAAGTACTTTAAGCACTATTTACAGACCATGCTGACTAGAAAGAACACTTTGACCGGAATCGAA TATAGGAACGACCCTACTATCTTCGCCTGGGAATTGATGAACGAGCCCCGTTGCATGACCGATCCTTCTGGTGACACTCTCCAAGATTGGATCGAAGAGA TGTCTGCTTTCGTGAAATCAATCGACAATAATCATCAGCTAACAGTGGGGCTCGAAGGGTTTTACGGCCCTAAAAACCCCAAAAGACTAACTGTGAATCC AGCTGATTGGGCTGCAGACCTTGGATCTGATTTCATTCGCAACTCCAAGGTCCCACACATCGATTTCGCCTCTGTTCACATCTACCCCGATCACTGGGTT GCTGATCAATCGTTCGAGGACAAGCTGAAATTCGTGACCAAGTGGATGCTCTCACACATAGAAGACGGCCACTATGAGCTAAACAAGCCCATCCTCTTCA CCGAATTCGGATTGTCCAATCTTAACAAGGACTTCCAGCCGTCTCAACGTGACCAGCTGTACAAAACAGTCTACGATATCATATACAAGTCTGCAAAACG AAACCGAGCCGGAGCTGGTGCCTTGATGTGGCAACTTTTCATCGAAGACATGGACGAGAGCAACGATGATTTCGGGATCGTCCCTTGGGAAAGAGCATCA ACGTACAAGATCATAACCGAGCAATCGTGCAAGTTGGCAAAGCTCCACGGCACCATAGACAACAATAACCAGAATCTGAAAGAACTGTGCTTGAGAAAAG AGTGA
AA sequence Show only first row Show all	>Lus10031650 pacid=23155996 polypeptide=Lus10031650 locus=Lus10031650.g ID=Lus10031650.BGIv1.0 annot-version=v1.0 MGGNGGGLFIPILGFASCVAFIYMSLGDLWPAAYPVEPAWSFVQRNGTRFVLDGKPFYVNGWNSYWLMDHSADDQRKHKSAKMLEAGSKMGLTVCRTWAF NDGAHNALQLSPGRFEENVFRALDHVIAEARTHKVRLILSLVNNLQAYGGKDRYVKWAWEEGIGLSSSNDSFFYDPSIKKYFKHYLQTMLTRKNTLTGIE YRNDPTIFAWELMNEPRCMTDPSGDTLQDWIEEMSAFVKSIDNNHQLTVGLEGFYGPKNPKRLTVNPADWAADLGSDFIRNSKVPHIDFASVHIYPDHWV ADQSFEDKLKFVTKWMLSHIEDGHYELNKPILFTEFGLSNLNKDFQPSQRDQLYKTVYDIIYKSAKRNRAGAGALMWQLFIEDMDESNDDFGIVPWERAS TYKIITEQSCKLAKLHGTIDNNNQNLKELCLRKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10031650 [exp]	0	1
					Lus10015410 [exp]	4.2	0.9571
AT3G15480			Protein of unknown function (D...		Lus10032662 [exp]	7.2	0.9543
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10014238 [exp]	10.8	0.9510
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Lus10022399 [exp]	13.6	0.9510
AT1G77580			Plant protein of unknown funct...		Lus10010888 [exp]	14.2	0.8910
AT1G56720			Protein kinase superfamily pro...		Lus10036863 [exp]	14.4	0.9128
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	15.1	0.9510
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10025593 [exp]	19.6	0.9499
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10033687 [exp]	20.0	0.9503
AT2G27740			Family of unknown function (DU...		Lus10019529 [exp]	20.7	0.9039

Compare expression of checked genes

Lus10031650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.