Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53050 638 / 0 Protein kinase superfamily protein (.1) AT1G03740 594 / 0 Protein kinase superfamily protein (.1.2) AT5G44290 593 / 0 Protein kinase superfamily protein (.1.2.3.4) AT1G71530 536 / 0 Protein kinase superfamily protein (.1.2) AT1G54610 533 / 0 Protein kinase superfamily protein (.1.2.3) AT1G09600 528 / 1e-178 Protein kinase superfamily protein (.1) AT1G74330 519 / 3e-175 Protein kinase superfamily protein (.1.2) AT5G50860 514 / 6e-175 Protein kinase superfamily protein (.1) AT1G18670 515 / 2e-173 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT1G57700 514 / 3e-173 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033684 [exp] 1306 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10018601 [exp] 906 / 0 AT1G53050 651 / 0.0 Protein kinase superfamily protein (.1) Lus10039836 [exp] 877 / 0 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 655 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 603 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 561 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 548 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 538 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 534 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G130000 [exp] 842 / 0 AT1G53050 690 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 695 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 688 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 568 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 551 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 548 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G103900 [exp] 548 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.015G103300 [exp] 547 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 546 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.013G100100 [exp] 531 / 1e-180 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031651 pacid=23155910 polypeptide=Lus10031651 locus=Lus10031651.g ID=Lus10031651.BGIv1.0 annot-version=v1.0 ATGGGGTGTATTGCTTCAAAAGAAGGGAGCCCCAGGGAGATTCTATCGTCTCGAAGGGGTGTGTCGTTCGATAGGCGAGTTGCTCATGTTAATAATTCGG GAAGGGAGGAAGGGAGTCGATCGAGGAGTGTGTCGGACAATGGAGATGTTAAGGTTATGTTGATTGAGAAGAGATCAAACAATCATGGTTCGAGTAGGCA TCATCATAGTGGTCGGCTGATGATGGATGTAACGCCCAAGGATTATCAAGTCGAGAAGAAGTCGGTCGAGAGACGCGAGGTTGTTCCACCAGCTGCTGTT CCTGCTGCTGCTGCTGCTGTAACCAGTTATTCCAGGAGTGAGAGAAGGTCTGAGATAACTGATTTCAGTGATCCAGCTTGGGGGAGGGTGCCAAAGAGTT TGGAAGCGGAGCAGGTTGCAGCAGGATGGCCTGCTTGGTTTGTCTCAGTTGCTGGCGAATCGATCAAAGGATGGGTGCCGAGAAAGGCTAATACATTTGA GAAATTGGATCGAGTAAGTTCTCTCGGTCCCCTTAATACTTTGTTTGCTATTCAATCCATGCCGATCTTTGTTCTTGTCATTTCTTTGATTCGCGGCGCG AGTGTTGGACTCAATTTTGGGGGTGATTTTCTCTTGCAGATTGGCCAAGGAACCTATAGCAGTGTCTACAAGGCTCGTGATGTCACACACAATAAGATTG TTGCTCTTAAGAAAGTTCGATTTGATAATAGCGATCCGGATAGTGTCAAATTTATGGCACGTGAAATACTCATTCTGCGCAAGCTGGATCATCCTAATGT TATAAAGTTGGAAGGGCTGATAACATCACAAACCTCTTCAACTTTGTACCTTATTTTCGAGTATATGGAACATGACCTGACAGGACTTGCCTCTATTCCA GGACTCAAGTTCACCGAACCTCAGATCAAATGCTACATGAAGCAACTCTTAAGCGGACTTGAGCATTGTCATAGTCGCGGAGTTCTGCATCGTGATATTA AGGGTTCGAATCTTCTAATTGATGACAATGGAGTCCTGAAAATTGCTGATTTTGGCTTGGCGAGTTTCTTTGATCCTAAAAGTAGTGCAACATTGACCAG CCGTGTTGTGACTCTTTGGTATAGAGCCCCGGAACTTTTACTTGGGGCTTGTAACTATGGAGTTTCTGTGGATTTATGGAGCACTGGCTGCATACTAGGT GAACTATATTCCGGAAAACCGATCTTACCTGGAAGGACAGAGGTTGAACAACTGCATAAAATCTTCAAGCTATGTGGTTCTCCATCTGAGGATTATTGGA AAAAATCGAAACTACGTCATTCATCAGTAATAAAGCCACAACGACCCTATAAACGATGTGTTGGAGAAACATTCAAGGACTTTCCTGCTCCTGCTCTTGG GCTTTTGGAGACCTTACTCTCCATCGATCCTGTTCAGAGAGGAAATGCAGCTTTAGTTCTGGAGAGTGAGTACTTTACAACCAGACCATTTGCTTGTAAT CCTTCAAGTTTGCCCAAATATCCTCCCAGCAAAGAAATTGATGCTAAAAAGCGAGATGAAGAAGCTAGAAGACAAAGGCAAGTAGCAGCCAAGGGGAATG ATCCGAATGAATCTATGCGTAACAAGGGACCTACTGGCAATGTCGACTTATGCACAGCGCAGGCTAGTCGCCATTCCTATTCTAAAGGCGACATGTCCCA CTCAAGCAAGGACAAGAATTTCTCAGGTCTCCTTGTTCATCCCTCTAAGCAAACCCAACCTGGTAAGGAAGGGAGGAGAAATTACATGGAGAACCAACGT CCGAAAGTTTCACATTCCGGGCCATTAGTCCATGGAGCTGGCTGGACAAAGTCCGGTAGGGATCACGAATATACTCATGGCGCATCAACCAGAAGCAACA ACTCCGGTTTAGTAGCATCCAGGCCTTCTTTGCCTGATGACTGCCAGGGGAAACCAAGCACTTCACAGCCAGATTCAGTAAAACAAGTAGGTAGACTTAG CCACTCGGAGTCCCATAGAGTAGAGGATCGCATTTTTCCGAGACAAGGTGGAATAGACTCTTCCCAAGCAGGGAGTGGGCAACCAGGCGGTCGAGACCCT GGCATGTATATTCGAGGCTCGAAAGGGAACAAGATATACGTATCCGGTCCACTGCTCGTTCCATCAAACGATGTGGACCAAATGCTCAAAGATCACGATC GTCAGATACAGGAATTTGCTCGGAGGCGAGTGGAAAAATCCAAGCTCGCAAAAGCAGTCGTTCCAGCGAGGTAA
AA sequence Show only first row Show all	>Lus10031651 pacid=23155910 polypeptide=Lus10031651 locus=Lus10031651.g ID=Lus10031651.BGIv1.0 annot-version=v1.0 MGCIASKEGSPREILSSRRGVSFDRRVAHVNNSGREEGSRSRSVSDNGDVKVMLIEKRSNNHGSSRHHHSGRLMMDVTPKDYQVEKKSVERREVVPPAAV PAAAAAVTSYSRSERRSEITDFSDPAWGRVPKSLEAEQVAAGWPAWFVSVAGESIKGWVPRKANTFEKLDRVSSLGPLNTLFAIQSMPIFVLVISLIRGA SVGLNFGGDFLLQIGQGTYSSVYKARDVTHNKIVALKKVRFDNSDPDSVKFMAREILILRKLDHPNVIKLEGLITSQTSSTLYLIFEYMEHDLTGLASIP GLKFTEPQIKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDDNGVLKIADFGLASFFDPKSSATLTSRVVTLWYRAPELLLGACNYGVSVDLWSTGCILG ELYSGKPILPGRTEVEQLHKIFKLCGSPSEDYWKKSKLRHSSVIKPQRPYKRCVGETFKDFPAPALGLLETLLSIDPVQRGNAALVLESEYFTTRPFACN PSSLPKYPPSKEIDAKKRDEEARRQRQVAAKGNDPNESMRNKGPTGNVDLCTAQASRHSYSKGDMSHSSKDKNFSGLLVHPSKQTQPGKEGRRNYMENQR PKVSHSGPLVHGAGWTKSGRDHEYTHGASTRSNNSGLVASRPSLPDDCQGKPSTSQPDSVKQVGRLSHSESHRVEDRIFPRQGGIDSSQAGSGQPGGRDP GMYIRGSKGNKIYVSGPLLVPSNDVDQMLKDHDRQIQEFARRRVEKSKLAKAVVPAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53050			Protein kinase superfamily pro...		Lus10031651 [exp]	0	1
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10018408 [exp]	3.2	0.8302
AT1G59590		ZCF37	ZCF37 (.1)		Lus10007746 [exp]	4.5	0.8200
AT5G45840			Leucine-rich repeat protein ki...		Lus10017439 [exp]	4.6	0.7990
AT2G41835	C2H2ZnF		zinc finger (C2H2 type, AN1-li...		Lus10012196 [exp]	5.7	0.8326
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10012930 [exp]	6.2	0.7855
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10027742 [exp]	7.1	0.8192
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	8.8	0.8022
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	10.7	0.8224
AT1G19660			Wound-responsive family protei...		Lus10007390 [exp]	11.0	0.7804
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10024233 [exp]	11.2	0.7954

Compare expression of checked genes

Lus10031651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.