Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62130 317 / 9e-107 Per1-like family protein (.1.2) AT1G16560 308 / 3e-103 Per1-like family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027411 [exp] 506 / 0 AT1G16560 393 / 5e-137 Per1-like family protein (.1.2.3.4) Lus10015006 [exp] 427 / 4e-150 AT1G16560 419 / 2e-147 Per1-like family protein (.1.2.3.4) Lus10038885 [exp] 422 / 4e-148 AT1G16560 417 / 2e-146 Per1-like family protein (.1.2.3.4) Lus10031187 [exp] 321 / 2e-108 AT1G16560 495 / 2e-177 Per1-like family protein (.1.2.3.4) Lus10031765 [exp] 323 / 6e-104 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134300 [exp] 382 / 2e-132 AT1G16560 466 / 8e-166 Per1-like family protein (.1.2.3.4) Potri.015G136600 [exp] 359 / 3e-123 AT1G16560 477 / 2e-170 Per1-like family protein (.1.2.3.4) Potri.007G065800 [exp] 349 / 2e-119 AT1G16560 538 / 0.0 Per1-like family protein (.1.2.3.4) Potri.002G177300 [exp] 0 / 1 AT1G16560 0 / 1 Per1-like family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF04080 [flax] [poplar] Per1 Per1-like family
Representative CDS sequence Show only first row Show all	>Lus10031658 pacid=23180820 polypeptide=Lus10031658 locus=Lus10031658.g ID=Lus10031658.BGIv1.0 annot-version=v1.0 ATGAACGGGGTCGCGCTTCTCGTGGCGGTTTTCTGTTTAGTTCGCCGGCTTGACGCCAGCGACGGCGAATGCGATCCGATTTACAGGAGGTGTGTAGAGG AGTGCCAGAGAACAGGATGTGTGGGAAACAACTGTTTCCAGCACTGCAAATTATCTTCTTCTTCCGATGGGAAACCAATTGATGGAGCCTGGTATCACCA CGAGCAGCTTTATCAGCGGTGGAAGCGATGGGATTGCCTAAATGATTGTAAGTACCATTGCATGATTGCCAGAGAAGACGAAAGGTTGGAACATGGTCAC AGTCCAGCCAAGTACCATGGCCGGTGGCCCTTCCACCGTCTCTATGGCATCCAGGAACCAGTTTTTGTGGCTCTGGCTGCTCTGATCGTTGCCATTCAGT TTCATGGCTGGATATCGTTTTTGATTCTTGTGTACTATAATTTGCGGCTGAGGCCGAATAGTAGGAACACTTACTATGAATACACTGGCTTGTGGCACAT CTATGGTTTCATGTCGATGAATGCTTGGCTTTGGTGCGCTGTCTTCCGCTCTCAGGATGTTGAGTTTACAGAGAAACTATACTGCTCATCTTACGTGGCG TGGCTTGGCTTCACTCGTATTCTGTTGACTCTTCGAGCTTTCAATATCAGAGATGAAGCCGCGAGGGTCATGACCGCTGCACCGGTGATTGCATTCGTTA CAACGCATATCGTGTACCTCAACTTGTACAACTTCGACAAAGTTCATACAAAGTATATACACTCTGGCTTATGTCTGCGTAGTTTTGCTCCCCCGAACCA TGGCAGGTTTGAACACGAAAGTAAGCTTGGTAATGACGTTAGTCCAGATGCTGATATGGGTCGTTTGGGTTGGTGTCTCGTGCCACCCCTCCCTATGGAA GGTTTGGGTGACGGTTCTTGCCCTGGGGGAAGCATAGCCATGTTATTGGAAGTGTACAACTTCCCGTCGATGCAGAGATACGTTTATGGTCGAGCAATGT GGCACGCTGCTGCCATTCCTCTTGGGTACATGTGGTGGAGTTTTGTGAAGGAGGATACTAAGTTTAGAACATCAAACCATCTTAAGAAAGCTAAGTAA
AA sequence Show only first row Show all	>Lus10031658 pacid=23180820 polypeptide=Lus10031658 locus=Lus10031658.g ID=Lus10031658.BGIv1.0 annot-version=v1.0 MNGVALLVAVFCLVRRLDASDGECDPIYRRCVEECQRTGCVGNNCFQHCKLSSSSDGKPIDGAWYHHEQLYQRWKRWDCLNDCKYHCMIAREDERLEHGH SPAKYHGRWPFHRLYGIQEPVFVALAALIVAIQFHGWISFLILVYYNLRLRPNSRNTYYEYTGLWHIYGFMSMNAWLWCAVFRSQDVEFTEKLYCSSYVA WLGFTRILLTLRAFNIRDEAARVMTAAPVIAFVTTHIVYLNLYNFDKVHTKYIHSGLCLRSFAPPNHGRFEHESKLGNDVSPDADMGRLGWCLVPPLPME GLGDGSCPGGSIAMLLEVYNFPSMQRYVYGRAMWHAAAIPLGYMWWSFVKEDTKFRTSNHLKKAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62130			Per1-like family protein (.1.2...		Lus10031658 [exp]	0	1
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	6.2	0.9299
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10000624 [exp]	7.7	0.8740
AT1G63940		MDAR6	monodehydroascorbate reductase...		Lus10028763 [exp]	7.9	0.9264
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010509 [exp]	12.6	0.9189
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10035932 [exp]	13.1	0.9205
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015634 [exp]	17.2	0.9078
AT5G63180			Pectin lyase-like superfamily ...		Lus10036946 [exp]	20.8	0.9102
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10016144 [exp]	21.1	0.8857
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Lus10016151 [exp]	21.2	0.9089
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029639 [exp]	21.6	0.8883

Compare expression of checked genes

Lus10031658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.