Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51970 622 / 0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT5G63620 114 / 4e-28 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT4G22110 92 / 2e-20 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 89 / 2e-19 GroES-like zinc-binding dehydrogenase family protein (.1) AT5G43940 89 / 2e-19 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G42250 87 / 1e-18 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22440 86 / 2e-18 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G77120 85 / 5e-18 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT1G22430 84 / 1e-17 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT4G37980 82 / 2e-17 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027410 [exp] 691 / 0 AT5G51970 613 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10031660 [exp] 570 / 0 AT5G51970 582 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10027409 [exp] 555 / 0 AT5G51970 567 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10039625 [exp] 96 / 7e-22 AT5G63620 655 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10029549 [exp] 96 / 1e-21 AT5G63620 653 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10004785 [exp] 86 / 2e-18 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10029759 [exp] 84 / 1e-17 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 84 / 1e-17 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 83 / 2e-17 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134900 [exp] 636 / 0 AT5G51970 651 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.012G135000 [exp] 557 / 0 AT5G51970 558 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.T010600 [exp] 105 / 6e-25 AT5G63620 646 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.004G138700 [exp] 101 / 1e-23 AT5G63620 644 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.011G152900 [exp] 96 / 7e-22 AT1G32780 545 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.011G152800 [exp] 96 / 8e-22 AT1G32780 540 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.019G041500 [exp] 93 / 8e-21 AT1G22430 308 / 1e-102 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.018G142750 [exp] 92 / 1e-20 AT1G22430 299 / 4e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.018G142700 [exp] 91 / 2e-20 AT1G22430 295 / 3e-97 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.019G041600 [exp] 91 / 4e-20 AT1G22430 300 / 3e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10031659 pacid=23180608 polypeptide=Lus10031659 locus=Lus10031659.g ID=Lus10031659.BGIv1.0 annot-version=v1.0 ATGGGTTCGCTAGGAGATTCCATTAATGGCGAAGAAGAAGAGAACATGGCCGCTTGGCTGGTCGCTGTCAACACCTTAAAGATCCAGCCTTTCAAGCTCC CTTCTCTAGGACCGCATGATGTAAGGATAAAGATGAAAGCTGTGGGCATTTGCGGCAGCGATGTTCACTACCTCAAGACATTGAGATGCGCACATTTTGT GGTGGAAGAGCCGATGGTGATCGGCCACGAATGTGCCGGAATCGTGGAAGAGATTGGAAGCGAGGTCAAACACCTAGTTCGTGGTGATCGTGTCGCGATC GAGCCAGGAATCAGTTGCTGGAGATGTAGCTACTGCAAAGAAGGCAGCTACAATCTATGCCCCGAGATGAAGTTCTTCGCAACTCCACCTGTTCACGGCT CTCTCGCCAACCAGGTGGTGCACCCTGCAGACCTTTGTTTCAAGCTGCCGGATAACGTGAGCCTTGAGGAAGGAGCAATGTGCGAGCCTTTGAGCGTCGG GGTCCACGCATGTCGTCGAGCCAATGTTGGCCCCGAGACGAATGTTTTAATCATGGGAGCTGGGCCAATAGGGCTCGTGGCTTTGCTGGCGGCTTGTGCT TTTGGGGCCCCCAGGGTTGTGATTGTGGATGTGGACGAGTATCGTTTGTCTGTTGCGAAAGAGCTTGGTGCCAATGGGACTGTAAAAGTATCAACGAATT CCGAGGATGTGGGTGCCGAAGTGGAGCTGATACAGAAAGCCATGGGAGGAGAAGGGATAGACCTCACCTTGGATTGTGCAGGATTCAACAAAACGATGAC GACGGCTCTGAAAGCAACGAGGCCAGGTGGCAAAGTGTGTCTTGTGGGAATGGGACACAATGAGATGACAGTGCCATTAACTCCAGCAGCTGCAAGAGAA GTGGATGTGGTGGGTGTGTTCAGGTACAAGAACACATGGCCATTGTGCATAGAGTTCTTGAGGAGCGGGAAGATAGATGTGAAGCCACTGATAACACATA GGTTTGGGTTTACACAGAAGGAGGTTGAAGATGCTTTCGAGACCAGCGCTCGCGGTGGTTCGGCCATTAAAGTCATGTTTAATCTCTGA
AA sequence Show only first row Show all	>Lus10031659 pacid=23180608 polypeptide=Lus10031659 locus=Lus10031659.g ID=Lus10031659.BGIv1.0 annot-version=v1.0 MGSLGDSINGEEEENMAAWLVAVNTLKIQPFKLPSLGPHDVRIKMKAVGICGSDVHYLKTLRCAHFVVEEPMVIGHECAGIVEEIGSEVKHLVRGDRVAI EPGISCWRCSYCKEGSYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVLIMGAGPIGLVALLAACA FGAPRVVIVDVDEYRLSVAKELGANGTVKVSTNSEDVGAEVELIQKAMGGEGIDLTLDCAGFNKTMTTALKATRPGGKVCLVGMGHNEMTVPLTPAAARE VDVVGVFRYKNTWPLCIEFLRSGKIDVKPLITHRFGFTQKEVEDAFETSARGGSAIKVMFNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	0	1
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	1.4	0.9826
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10016858 [exp]	2.0	0.9823
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10022421 [exp]	2.4	0.9769
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10025750 [exp]	4.6	0.9762
AT3G30390			Transmembrane amino acid trans...		Lus10036845 [exp]	4.9	0.9751
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10011345 [exp]	5.0	0.9656
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	5.7	0.9805
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	6.0	0.9794
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10009808 [exp]	7.7	0.9709
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	8.1	0.9785

Compare expression of checked genes

Lus10031659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.