Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29760 428 / 1e-141 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 421 / 2e-139 SLO1 SLOW GROWTH 1 (.1) AT3G15930 404 / 8e-133 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G29230 387 / 2e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31430 369 / 1e-120 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G14820 370 / 4e-119 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 364 / 3e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 356 / 9e-114 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74630 346 / 5e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G08510 342 / 6e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027408 [exp] 1124 / 0 AT2G29760 405 / 5e-133 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 394 / 2e-128 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 392 / 1e-127 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 378 / 1e-123 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10002288 [exp] 378 / 1e-123 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10009269 [exp] 373 / 3e-121 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020918 [exp] 370 / 2e-120 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005987 [exp] 358 / 1e-117 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 365 / 2e-117 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044700 [exp] 436 / 2e-144 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 422 / 7e-140 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.003G031600 [exp] 410 / 2e-134 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G125500 [exp] 402 / 6e-133 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G088600 [exp] 402 / 3e-132 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G071800 [exp] 392 / 1e-127 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 384 / 9e-126 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G217900 [exp] 383 / 5e-125 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.010G086200 [exp] 383 / 3e-124 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G121400 [exp] 376 / 6e-124 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031661 pacid=23180778 polypeptide=Lus10031661 locus=Lus10031661.g ID=Lus10031661.BGIv1.0 annot-version=v1.0 ATGAAGAAGCTGTCAAGACCCACTTCCCAGATCCTACAAAAGCGACCAACGAAGAACCTAGTTTCGACCAACTTTATCAAAGAGCGGCACGGCCAACTCA TCAGGCAGCAGCTCCAATCCAACCCATTCGCCATGGCCGACGTCGTGAAATGGTACGCTCTCTCTCCATCTCACATTCACAAAGCCCTTCTCATCTTCGC CCAACTCGACGCCCCGACTCGGCCGATTTACAACAACTTGATCCGCGGCATGTCTCAGAGCGAACACCCCTTTGACGCCGTCGAGATGTATGTGAAACAA ATGTATCGTTGTGGAGTAATTGGCGACACCTTAACGATGATTTTCCTGTTCAAGGCTTGTGGTCGGGTTAGGGATGGTTTGTTTGGTGAATTGTTTCATG CGCATTGTAGGAAGCTTGGATGTGACTCGGATGTGTCAGTGTCGAATGGGTTGATGCGGATGTATGGAAATTTAGGTGATTTGGAGGCTGCACGTAAGGT GTTTGACGAAATGCCTGAGAGAGACTTGGTTTCGTGGAACTCATTGGTTTGTGGCTATGCGGAATGCAAGAGGTTTAGAGAGGTTTTAGGAGTGTTTGAT TTGATGAGGGAAAGTAACGTGAAAGGTGATGCTGTGACAATGGTGAAAACTATATTAGCTTCTGTTAATTTGGGTGAGGATAAGACTGCTGATCTGATGG TTAAGTATATTGAAGAGGAAAGAGTAGAGATTGATGTTTATTTGGGGAACACCATGATTGATATGTATGGTCAGCGTGGCTTAGTGGATTTAGCTCGCAG AGTTTTCGACCGAATGCGAGAGAAGAATGTTGTTTCTTGGAATGCCATGACCAAGGGGTATGTGAAAGCAGGGGACATGGTTTCTGCAAGGAAAGTATTG GACGATATGCCTGTGAAGAATGTGATCTCCTGGACGAATCTGATCACAGGGTATTGTAAAGCCGAGACCTTTTCCGATGCAGTCAAAGCTTTCCAAGATA TGATGGGAGATAACTTGAAACCGGATGAGATCACAGTAGCGAGCGTACTCTCCGCCTGTGCTCGGTTGGGATCTCTCGATGCCGGGCAGGCAATTCACGA CTATGTTCGTCGACACGGTATAAAAGAAGATGTTTTCGTCGGAAATGCTTTGATAGACATGTATTCCAAATGCGGCTCTGTTGAGAAAGCACGGGATGTT TTCCTCGGAATGAATCGTAAAGATAGTGTTTCGTGGACTTCGATCATATGTGGGCTCGCTGTCAATGGTCTTGCTGATGATGCAATGCAGCTATTCTCCC GGATGTTGACCGAAGGTCAACGGCCAATCCACGGTACGTTCATTGGAGTTTTGATTGCTTGCAAACATAGTGGACAGGTAGATAGAGGGTTGGAGTTTTT CGAAAGTATGGAGAAGGTTTACGGGTTAAAGCCCGAGATGAAACATTACGGATGTGTTGTGGACCTCTTGAGCCGGTCCGGTAACTTGGAGAGGGCGTAC GAGTTTGTAGAAGCGATGCCGGTGGTGCCAGATGTTGTGATATGGAGGATCTTGTTAGGTGCTTGTATGCTCCATGGGAATGTAGGTTTGGCTGAGATCG TTACAAAGAAGCTTCTCGAGGTGGATCCTTCTAATAGCGGAAACTATGTCAGCTTGTCGAATGCTTATGCCGGTTCAGACCGGTGGGAAGATGCCGACGA ACTGAGGAGACTGATGGGGGTGAGAGATTTGCAGAAGCCTTCTGGTTGGAGCTCGATTGAAGGAGATCGAGACCGGTCAGTTCTTCCTCATCAAGTAACT TCTGTAAAATAA
AA sequence Show only first row Show all	>Lus10031661 pacid=23180778 polypeptide=Lus10031661 locus=Lus10031661.g ID=Lus10031661.BGIv1.0 annot-version=v1.0 MKKLSRPTSQILQKRPTKNLVSTNFIKERHGQLIRQQLQSNPFAMADVVKWYALSPSHIHKALLIFAQLDAPTRPIYNNLIRGMSQSEHPFDAVEMYVKQ MYRCGVIGDTLTMIFLFKACGRVRDGLFGELFHAHCRKLGCDSDVSVSNGLMRMYGNLGDLEAARKVFDEMPERDLVSWNSLVCGYAECKRFREVLGVFD LMRESNVKGDAVTMVKTILASVNLGEDKTADLMVKYIEEERVEIDVYLGNTMIDMYGQRGLVDLARRVFDRMREKNVVSWNAMTKGYVKAGDMVSARKVL DDMPVKNVISWTNLITGYCKAETFSDAVKAFQDMMGDNLKPDEITVASVLSACARLGSLDAGQAIHDYVRRHGIKEDVFVGNALIDMYSKCGSVEKARDV FLGMNRKDSVSWTSIICGLAVNGLADDAMQLFSRMLTEGQRPIHGTFIGVLIACKHSGQVDRGLEFFESMEKVYGLKPEMKHYGCVVDLLSRSGNLERAY EFVEAMPVVPDVVIWRILLGACMLHGNVGLAEIVTKKLLEVDPSNSGNYVSLSNAYAGSDRWEDADELRRLMGVRDLQKPSGWSSIEGDRDRSVLPHQVT SVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10031661 [exp]	0	1
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Lus10030026 [exp]	1.4	0.8888
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10000091 [exp]	3.2	0.8521
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10016943 [exp]	4.6	0.8398
AT1G62730			Terpenoid synthases superfamil...		Lus10024610 [exp]	7.3	0.8219
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10009548 [exp]	8.7	0.8300
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10007353 [exp]	12.2	0.8327
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10003563 [exp]	15.9	0.8235
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10038839 [exp]	16.9	0.8151
AT4G20980			Eukaryotic translation initiat...		Lus10015435 [exp]	21.6	0.8287
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10029697 [exp]	22.2	0.8141

Compare expression of checked genes

Lus10031661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.