Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51890 423 / 9e-150 Peroxidase superfamily protein (.1) AT5G42180 320 / 4e-109 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT4G33420 252 / 2e-82 Peroxidase superfamily protein (.1) AT3G01190 246 / 5e-80 Peroxidase superfamily protein (.1) AT5G17820 243 / 1e-78 Peroxidase superfamily protein (.1) AT3G21770 241 / 6e-78 Peroxidase superfamily protein (.1) AT4G26010 240 / 7e-78 Peroxidase superfamily protein (.1) AT1G05260 238 / 8e-77 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G40150 238 / 1e-76 Peroxidase superfamily protein (.1) AT2G22420 236 / 5e-76 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027405 [exp] 575 / 0 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1) Lus10005614 [exp] 319 / 1e-108 AT5G42180 461 / 6e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10034547 [exp] 315 / 5e-107 AT5G42180 471 / 7e-169 peroxidase 64, Peroxidase superfamily protein (.1) Lus10017288 [exp] 313 / 2e-106 AT5G42180 462 / 4e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10029543 [exp] 258 / 2e-84 AT4G33420 479 / 1e-171 Peroxidase superfamily protein (.1) Lus10028736 [exp] 254 / 2e-83 AT1G05260 266 / 4e-88 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10001324 [exp] 247 / 3e-80 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10039445 [exp] 244 / 3e-79 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10028688 [exp] 244 / 5e-79 AT4G11290 265 / 5e-87 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108900 [exp] 333 / 3e-114 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.015G138300 [exp] 322 / 2e-110 AT5G51890 330 / 6e-114 Peroxidase superfamily protein (.1) Potri.002G018000 [exp] 320 / 5e-109 AT5G42180 483 / 1e-173 peroxidase 64, Peroxidase superfamily protein (.1) Potri.013G066800 [exp] 263 / 3e-86 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 257 / 4e-84 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.004G134800 [exp] 256 / 6e-84 AT4G33420 457 / 3e-163 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 256 / 8e-84 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.T045500 [exp] 255 / 9e-84 AT4G33420 441 / 9e-157 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 254 / 2e-83 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 254 / 2e-83 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10031664 pacid=23180802 polypeptide=Lus10031664 locus=Lus10031664.g ID=Lus10031664.BGIv1.0 annot-version=v1.0 ATGGCTGCTCTTCGAGTTGTGTGCTTTTTAACGACCCTTCTCTTGGTCACACTGATCTCGTCGTCACGAGGAGCGTTGGATGCCCATTATTACGACCAAA CATGTCCGCAGGCTGAGGCCATTGTCTCGCAAACGGTTCGCAATGCCTCGATCTACGACCCCAAAGTCCCAGCTCGCATCCTTAGAATGTTCTTCCATGA CTGTTTCATAAGGGGCTGTGATGCTTCTATTTTGATTGACTCTACTCCTGGAAACCAAGCTGAGAAAGATGGACCTCCTAATGTTTCGGTTCGATCGTTT TATGTGATCGATGATGCCAAAGCTAAGCTCGAAAAGGCTTGTCCCGAAACGGTGTCGTGTGCTGATATCATAGCTATAGCGGCTAGAGATGTTGTAGCCA TGTTTGGAGGACCAAACTGGAACGTACAAAAAGGCAGAAAAGACGGCAGAATCTCAAAATCAAGTGATACAGTGAACTTACCCGCTCCAACATTCAACGT GACACAATTGAGCCAAGCCTTCGTGAGCCGGGGCCTAGCCATCAAGGACCTAGTAGCACTATCCGGAGCCCACACATTAGGGTTCTCACATTGCTCTTCA TTCCAATCTCGCCTTCGAAAGTTCAGCTCCATCCACTACACCGATCCAACCATGAACCCGGAACTCGCCAACGTGTTGATGAAGAAGTGCCCCAACCCAA ACTCTGATCCTTCTGCAGGGACATTCCTTGATTCGACCTCTTCAAAGTTCGACAACGAGTACTTCAAACAGCTCGTGGAAGGGAAAGGGGTGTTTGGATC AGACCAGTCGTTGTTTGTTGATGGGAGGACAAAGGGTATCGTTGAAGGGTTTGCCAAGGATGAGGGGATGTTCTTTAGGGAATTTGCTGCTTCCATGGTG AAGCTTGGGAGTGTTGGTGTTCTTGAGACTGGTGAAGTGAGGAAACAATGTAGGGTTGTGAATTGA
AA sequence Show only first row Show all	>Lus10031664 pacid=23180802 polypeptide=Lus10031664 locus=Lus10031664.g ID=Lus10031664.BGIv1.0 annot-version=v1.0 MAALRVVCFLTTLLLVTLISSSRGALDAHYYDQTCPQAEAIVSQTVRNASIYDPKVPARILRMFFHDCFIRGCDASILIDSTPGNQAEKDGPPNVSVRSF YVIDDAKAKLEKACPETVSCADIIAIAARDVVAMFGGPNWNVQKGRKDGRISKSSDTVNLPAPTFNVTQLSQAFVSRGLAIKDLVALSGAHTLGFSHCSS FQSRLRKFSSIHYTDPTMNPELANVLMKKCPNPNSDPSAGTFLDSTSSKFDNEYFKQLVEGKGVFGSDQSLFVDGRTKGIVEGFAKDEGMFFREFAASMV KLGSVGVLETGEVRKQCRVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51890			Peroxidase superfamily protein...		Lus10031664 [exp]	0	1
AT5G51890			Peroxidase superfamily protein...		Lus10027405 [exp]	1.0	0.9668
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	2.8	0.9508
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021540 [exp]	3.7	0.9110
AT5G10530			Concanavalin A-like lectin pro...		Lus10033782 [exp]	4.5	0.8792
AT2G19130			S-locus lectin protein kinase ...		Lus10029802 [exp]	4.6	0.9323
					Lus10021406 [exp]	7.5	0.9277
AT1G03055			unknown protein		Lus10024837 [exp]	8.6	0.8412
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10009996 [exp]	9.5	0.9140
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10004504 [exp]	9.5	0.9126
AT4G23030			MATE efflux family protein (.1...		Lus10027417 [exp]	9.5	0.9031

Compare expression of checked genes

Lus10031664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.