Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62165 180 / 3e-58 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT2G45660 154 / 6e-48 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT5G51870 152 / 6e-48 MADS AGL71 AGAMOUS-like 71 (.1.2.3) AT4G22950 153 / 1e-47 MADS AGL19 AGAMOUS-like 19 (.1) AT4G11880 152 / 3e-47 MADS AGL14 AGAMOUS-like 14 (.1) AT5G51860 150 / 1e-46 MADS AGL72 AGAMOUS-like 72, K-box region and MADS-box transcription factor family protein (.1.2) AT4G18960 144 / 2e-43 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT4G09960 140 / 2e-42 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT3G58780 136 / 1e-40 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G03710 133 / 5e-40 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027404 [exp] 244 / 7e-84 AT5G62165 154 / 3e-47 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Lus10008264 [exp] 149 / 3e-45 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10005302 [exp] 147 / 1e-44 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10006715 [exp] 144 / 1e-43 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10014143 [exp] 136 / 2e-40 AT4G22950 212 / 6e-69 AGAMOUS-like 19 (.1) Lus10009481 [exp] 135 / 1e-39 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10034370 [exp] 128 / 1e-37 AT1G69120 224 / 1e-73 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10034663 [exp] 128 / 4e-37 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10003125 [exp] 125 / 6e-37 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112400 [exp] 166 / 7e-53 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.002G151700 [exp] 164 / 5e-52 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.014G074200 [exp] 164 / 6e-52 AT2G45660 242 / 3e-81 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.003G119700 [exp] 156 / 6e-49 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.012G133000 [exp] 155 / 1e-48 AT5G62165 218 / 3e-72 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Potri.013G104900 [exp] 146 / 9e-45 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.004G064300 [exp] 140 / 3e-42 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.011G075800 [exp] 140 / 3e-42 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.019G077200 [exp] 135 / 2e-40 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.012G132600 [exp] 130 / 1e-38 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10031665 pacid=23180720 polypeptide=Lus10031665 locus=Lus10031665.g ID=Lus10031665.BGIv1.0 annot-version=v1.0 ATGGTGAGGGGCAAAGTGGAGATGAGGAAGATAGAGAACACGACGAGCAGGCAAGTTACCTTCTCCAAGCGGAGGAATGGCCTCTTGAAGAAGGCTAATG AGCTTTCTGTGCTTTGCGACGCCGAGGTCGGAGTCGTCGTCTTCTCCCAGCGCGGCCGCCTCTACGAGTTCTCCAGCCACGGAATGGACAAGACGATAGC TCGGTACAGAAAGTACGCAACAGTTGAAATCAACAGGAGCGATAGTGCAGCTTCCTGCATTCAGCAGCAACTCAAACAAGAATCCGCTTCTCTCGCCAAC AAGATCGAGCTCCTCCAAGCCTCCACACGGAGGTTGCTTGGAGAAGGGTTAGAGAGTTGTACCCTGGAAGAGATCAAAGACACAAGCGACAAGCTCGAAA GGAGTTTGACCAAAGTCAGACTCAGAAAAGTACGTACCACTTTCTAA
AA sequence Show only first row Show all	>Lus10031665 pacid=23180720 polypeptide=Lus10031665 locus=Lus10031665.g ID=Lus10031665.BGIv1.0 annot-version=v1.0 MVRGKVEMRKIENTTSRQVTFSKRRNGLLKKANELSVLCDAEVGVVVFSQRGRLYEFSSHGMDKTIARYRKYATVEINRSDSAASCIQQQLKQESASLAN KIELLQASTRRLLGEGLESCTLEEIKDTSDKLERSLTKVRLRKVRTTF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62165	MADS	FYF, AGL42	FOREVER YOUNG FLOWER, AGAMOUS-...		Lus10031665 [exp]	0	1
AT5G62165	MADS	FYF, AGL42	FOREVER YOUNG FLOWER, AGAMOUS-...		Lus10027404 [exp]	1.4	0.8934
AT3G25805			unknown protein		Lus10016741 [exp]	12.4	0.8553
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10003488 [exp]	15.2	0.8267
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10011941 [exp]	15.3	0.8253
AT1G18610			Galactose oxidase/kelch repeat...		Lus10010913 [exp]	16.1	0.8332
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Lus10010567 [exp]	17.9	0.8100
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10022599 [exp]	18.0	0.8461
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10021498 [exp]	18.3	0.8505
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10037801 [exp]	21.0	0.8287
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10013037 [exp]	23.3	0.8190

Compare expression of checked genes

Lus10031665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.