Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62170 175 / 8e-46 unknown protein AT5G51850 110 / 8e-25 unknown protein AT4G25430 84 / 1e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027402 [exp] 471 / 6e-160 AT5G62170 161 / 3e-43 unknown protein Lus10027403 [exp] 278 / 8e-88 AT5G62170 84 / 4e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G132900 [exp] 348 / 8e-109 AT5G62170 247 / 1e-71 unknown protein Potri.015G135200 [exp] 323 / 5e-99 AT5G62170 239 / 2e-68 unknown protein Potri.009G030700 [exp] 45 / 0.0002 AT5G02390 99 / 7e-21 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.016G080200 [exp] 45 / 0.0002 AT3G53540 234 / 1e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031666 pacid=23180655 polypeptide=Lus10031666 locus=Lus10031666.g ID=Lus10031666.BGIv1.0 annot-version=v1.0 ATGGGCAGAGAATGGTACTGGGGCGGAGGAGGAGGAGGAGGAAGCAAATCCTCCAAAAGAAAATCCACCTCCAAAAAACCTGCCCCAGATGGCGTTGGAG GAGGAATGGCAACCGCCGCTTCTGCTCCGGCGGGTTGCATGTGTGCAGTCTTCCAGTTGTTCGACTTCCACCAGCTCCCTTTCTCCACCCCTCTCAACCA CCGCTCTTCTTTCCACATCCCACACCACCCTCCCTCAATTCCTAAAGGCTCGGAAGCGCCGAGGAATAGCTTGGAGCTGCTGGAGGAAATGGAGGACAGA GCTTCATCGCTGCCGCTAGCCGTTAAAGCATCTCATCCGCAGAATTTAAACATCCCAATGGGGATTCAAATCAAGACGACCCGACCCGGATCGGATTCAG AGACGGTTCCTTCTTCTCCGGCGACGAAGACTCCGACTTTGGTAGCTAGATTGATGGGTCTGGATCTTCTCCCGGAGAATCAGAACTATTCTCCTCGTTC CTCTGCTTCTTCTTCAACGACGCCGTATAAGCTCTCCCATCATTTCACCAGCCGTCCCAAGCAGCAGGGATCCACTAACAGTTACAGCCACCACCGCCGG AGCTGCGATGATTCCGGCGCCGGCCGGAGGTCACTCCCTGAGACGCCTAGAATTTCATCGGCGAGGAGGTCTGATGTTGACCACTACCACCACCGGCTGT CGCTCCAGCTGAACAACAAGGAAAACACGAACACAAGCTCCTCTAGCGAGGAGCTTGTGATCTCTCGGATTAAAGCGTTGAGGCTTAACGGAAGAGATTT GAAGCCGGAGGAGGAGTGCCGGAGTCCGAGGCAGTACGCGAGGCAGATTGTGAAGCAGGTGAAGGAGAGCGTGAGTCGAAGAGTCGGTTTGCTTGACATT ACTAATATTAATAATCAGATGAAAAACAGAGATCCTCCGCTGCCGGAAAAACAGAGTCGACGAAGCGGTGGCGGCGGCGGGGGAGTAACAGGGAGTAGGA ATAGGAGTAGGAGGGATAACGACCTGGTGAAGTCGAAGAAGATCACCAAGTTGTTGACGAGGCTGGAGGAGGAGGAAGAAGAGGAGGATTCGTTTGTCAA TTTGGTACCCTTTAAAAAGGACCACAATGTGTTCGACGACATGTCTCACTCAAGAAAAAAGTCGATTTTGTCAGGGGCTCCGATCAGTAGTCAGCCGCTG CGGAAGAATGACGAGGACTCTGCGGTGAAGCTGATGGTAGTATCGCCGCCGATTGCGGTTCCGGCGGGGAGGAAGGAAGGTGGAGGGAAGAGAGTGCTGC CGCCGCAGACGTCGGATATTATACGGAACAAGCAAGAGGAGCCGTTTGTACGTCCGTCGGCCGGAAACAGAGGCGGCGGAGGAAATATTCCCGACAAGAG GTGCAGGAAAACGCCGTTATCAAGTAACCTACTGCAGGGTATTTCTGTCCCTTCGATCATTCTCCCGGTGAAGAAAGATCCCGCTCCTCCGGCCACCAAA ATCCTTTCTCCTCAAAAACAGGCAGACTCAAAACGCTGCACTTCGACACAGTTACCGAGTAGTCCGAACCATACGGCGTCGTACAGGCTAACTTCTCATC ATCAGCAAGAAGCAATGAGGCCGCTACCTTCCCAAGAAACTGACAACAAGAAGCAAGCCGCCGCCCCTTCCACCGCCGGAGATGGGCCTGCCGCTGCGGC GGAATACGAGTACATCACCAGAATACTAAAACGAACCGGAATTGAAAAACACACCCCTATCTCCTTCACCAAATGGTTTTCTCCAGCTCACCCGCTCGAC CCGACAATCTTCTACCACCTGGAACACATCACCACCGCCACCACCACTCCTCCGCCGTCCTCCGGCCACGTCATCCCACCCTCCGATCGAAAATTACTCT TCCATCTAGTCGACGAAATCCTCTCCGGGATCCTCAAGCCGTACATCAACGTGAAACCATGGACGACGACGAACCGGCCACCGCCGGCGGCGGCGGCGAG AGGCGCAGAACTAATCAACGATCTCTGCAGGAGAATCCGTAGCTTCCCGAACGCCGACTGTCGGGTTTTGGAAGATATCGACGCATTGATTGACAAGGAC TTGCCGGAGCGGTGGATGGAGACGGCGGCGGAGGAAGAAGGGGAAGGTATCGTGACGGAGGTGGAGAAGGAAATATTGGAGTCGTTGATACAAGAAACGG CGGGAGACGTATTGGTTTCCCTGACACGGCGGGAGACATATTGGTTTCCCTGGGGGCGAAACGGCGGCGAGCCCTTTCGCGGGGTCACGTGCTGGGTCAA GAGTTTGGTCACGTGA
AA sequence Show only first row Show all	>Lus10031666 pacid=23180655 polypeptide=Lus10031666 locus=Lus10031666.g ID=Lus10031666.BGIv1.0 annot-version=v1.0 MGREWYWGGGGGGGSKSSKRKSTSKKPAPDGVGGGMATAASAPAGCMCAVFQLFDFHQLPFSTPLNHRSSFHIPHHPPSIPKGSEAPRNSLELLEEMEDR ASSLPLAVKASHPQNLNIPMGIQIKTTRPGSDSETVPSSPATKTPTLVARLMGLDLLPENQNYSPRSSASSSTTPYKLSHHFTSRPKQQGSTNSYSHHRR SCDDSGAGRRSLPETPRISSARRSDVDHYHHRLSLQLNNKENTNTSSSSEELVISRIKALRLNGRDLKPEEECRSPRQYARQIVKQVKESVSRRVGLLDI TNINNQMKNRDPPLPEKQSRRSGGGGGGVTGSRNRSRRDNDLVKSKKITKLLTRLEEEEEEEDSFVNLVPFKKDHNVFDDMSHSRKKSILSGAPISSQPL RKNDEDSAVKLMVVSPPIAVPAGRKEGGGKRVLPPQTSDIIRNKQEEPFVRPSAGNRGGGGNIPDKRCRKTPLSSNLLQGISVPSIILPVKKDPAPPATK ILSPQKQADSKRCTSTQLPSSPNHTASYRLTSHHQQEAMRPLPSQETDNKKQAAAPSTAGDGPAAAAEYEYITRILKRTGIEKHTPISFTKWFSPAHPLD PTIFYHLEHITTATTTPPPSSGHVIPPSDRKLLFHLVDEILSGILKPYINVKPWTTTNRPPPAAAARGAELINDLCRRIRSFPNADCRVLEDIDALIDKD LPERWMETAAEEEGEGIVTEVEKEILESLIQETAGDVLVSLTRRETYWFPWGRNGGEPFRGVTCWVKSLVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62170			unknown protein		Lus10031666 [exp]	0	1
AT3G63430			unknown protein		Lus10024836 [exp]	8.2	0.9075
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10042739 [exp]	9.6	0.9079
AT3G22550			Protein of unknown function (D...		Lus10012417 [exp]	11.7	0.8692
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	12.0	0.8803
AT4G14180		ATPRD1	putative recombination initiat...		Lus10002081 [exp]	12.3	0.9036
AT2G28660			Chloroplast-targeted copper ch...		Lus10040870 [exp]	12.4	0.8832
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10022308 [exp]	13.2	0.8582
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10030674 [exp]	20.3	0.8429
AT5G27550			P-loop containing nucleoside t...		Lus10004487 [exp]	21.4	0.9056
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022679 [exp]	24.0	0.9032

Compare expression of checked genes

Lus10031666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.