Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51840 264 / 5e-89 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135000 [exp] 268 / 2e-90 AT5G51840 219 / 1e-71 unknown protein Potri.012G132832 [exp] 129 / 3e-37 AT5G51840 137 / 1e-40 unknown protein Potri.012G132766 [exp] 80 / 2e-19 AT5G51840 89 / 2e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031667 pacid=23180582 polypeptide=Lus10031667 locus=Lus10031667.g ID=Lus10031667.BGIv1.0 annot-version=v1.0 ATGGCTTCGAATCCTTCTCTTAAGCCTGAGATCGGTCCCGACGGTCTCGCCATAGAGTCTCCGGTCATCGCCTACACCGAGCGGGTGATTGCTGAAGAGC AGCTTCAGTTACTGAAATACATTGAAGAAAACAAGTCGAAGATACGCGATGTTGAGCGCGAGCTTGCAACTTTATCTATGGATTTGAAGCTAACTGCTGG ACCGAAGAAAGCTGGTTGGTCGTCGTTGTTTCCTTTAGTTCTTGATGTGTTTGTCGTATTTGCACTTGAGCATCTGAGGAAGAAAATTGAAGTTTCAGCA GAAAAAATTCATCAAGCAAAGTTGAAGGAGGAACAGGCACGAAAGGCGTGGGAAGCTACATTGCAAGCCTTGAAAGATGAGGAAGAAACGAAACAGAAGT TATGCGATGACTTAAATCGACTGGTTGAAGAAAGCAGCAACTCGCAGTTTGCTAGACTTGAGGAACTAAAAAGGCGAATGGAAGCGTTAAATCCAAACAG AGTATCATCTGCAATATCTCCTCATAATGGACAACCTTCAGACAGCAGTACGACAGCAGGCGCTCCCTCTATTGCTCCATCAACAGCACCAGCAGGTAAC GACAGTGGAAATGCACCTAACCAAGCAGAGGACAACCAAGTTCCAAATGGGCCGGGACAACAACAGCCTGCTTCAGTAGGAGCCAAGAAGAAGGTCCAAG TCCACGTAAAAGGCAGGGGCCTCGGGGCCGTACCCAAACGACAACCTGGCTGGACCGGGGCCGGGTTCGATGTAGATGGCAGGAATTAA
AA sequence Show only first row Show all	>Lus10031667 pacid=23180582 polypeptide=Lus10031667 locus=Lus10031667.g ID=Lus10031667.BGIv1.0 annot-version=v1.0 MASNPSLKPEIGPDGLAIESPVIAYTERVIAEEQLQLLKYIEENKSKIRDVERELATLSMDLKLTAGPKKAGWSSLFPLVLDVFVVFALEHLRKKIEVSA EKIHQAKLKEEQARKAWEATLQALKDEEETKQKLCDDLNRLVEESSNSQFARLEELKRRMEALNPNRVSSAISPHNGQPSDSSTTAGAPSIAPSTAPAGN DSGNAPNQAEDNQVPNGPGQQQPASVGAKKKVQVHVKGRGLGAVPKRQPGWTGAGFDVDGRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51840			unknown protein		Lus10031667 [exp]	0	1
AT2G03350			Protein of unknown function, D...		Lus10030420 [exp]	3.6	0.7348
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10025738 [exp]	6.2	0.7085
AT4G25315			Expressed protein (.1.2)		Lus10014065 [exp]	8.5	0.6861
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Lus10012837 [exp]	11.9	0.7119
AT4G18650			transcription factor-related (...		Lus10029229 [exp]	20.7	0.6980
AT1G14390			Leucine-rich repeat protein ki...		Lus10030785 [exp]	29.1	0.6539
AT5G36230			ARM repeat superfamily protein...		Lus10029667 [exp]	38.4	0.6552
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10005772 [exp]	39.5	0.6718
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Lus10020188 [exp]	43.4	0.6697
AT3G05640			Protein phosphatase 2C family ...		Lus10020671 [exp]	47.4	0.6545

Compare expression of checked genes

Lus10031667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.