Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51830 493 / 2e-176 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 450 / 9e-159 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 417 / 1e-146 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 397 / 6e-139 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 390 / 5e-136 STH pfkB-like carbohydrate kinase family protein (.1) AT1G06030 389 / 2e-135 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 387 / 2e-134 pfkB-like carbohydrate kinase family protein (.1) AT1G50390 157 / 2e-47 pfkB-like carbohydrate kinase family protein (.1) AT3G54090 155 / 4e-43 FLN1 fructokinase-like 1 (.1) AT1G69200 147 / 3e-39 FLN2 fructokinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027401 [exp] 619 / 0 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 449 / 2e-158 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 443 / 4e-156 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 395 / 2e-137 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10040562 [exp] 390 / 3e-136 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 388 / 6e-135 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 385 / 4e-134 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 364 / 2e-126 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Lus10020346 [exp] 308 / 7e-105 AT3G59480 441 / 8e-158 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G132700 [exp] 510 / 0 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 506 / 0 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 466 / 6e-165 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 439 / 1e-154 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 419 / 2e-147 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 393 / 1e-136 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 392 / 1e-136 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.008G097300 [exp] 163 / 4e-45 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.016G109600 [exp] 135 / 1e-35 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.014G074125 [exp] 86 / 2e-20 AT5G51830 80 / 7e-19 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10031668 pacid=23180683 polypeptide=Lus10031668 locus=Lus10031668.g ID=Lus10031668.BGIv1.0 annot-version=v1.0 ATGGCCCAGAATCAAGCCAAAGGTCTGCTTCTTCCCGTTTCGCTCGCCATGTTTGCCCTCTCATCTCTTGAATCGGACAAGGATCCTGGCTCAAAGTCAC TGGTGGTTTGCTTTGGGGAAATGCTGATTGACTTTGTGCCAACGGTTAATGGCGTTTCACTAGCTGAAGCTCCTGATTTCAGGAAGGCTCCTGGCGGGGC TCCTGCCAATGTCGCTGTTGGCATTTCGAGACTGGGCGGTTCGTCAGCTTTTATAGGCAAGTTGGGTGATGATGAATTCGGGCATATGTTGGATGATATA CTGAAGCAAAACAATGTTGATAACTCTGGCGTCCGGTTCGATCCCCATGCGAGGACTGCGTTGGCGTTTGTAACACTCAGAGCTGATGGCGAACGTGAAT TCCTCTTCTTTCGGCATCCAAGTGCAGACATGCTACTTAAGGAGTCAGAGCTCCAGATTGACATTCTGAAGAAAGCCATAGTCTTCCACTGCGGTTCAAT TAGTTTGATCTCAGACCCATGCAGGTCAGCTCAAATTGCTGCACTGAAAACCGTGAAAACTTCCGGTGGCATTCTGTCGTATGATCCAAATCTGAGGCTG GCATTATGGCCATCCCCAGAGGCTGCTAAAGAAGGAATCATGAGCATATGGAATGAGGCTGATGTTATTAAGATAAGCGAGGATGAAATTGTGTTCTTGA CTGGAGGTGATGATCCCAACGACGATGATGTCGTCCTAAAGAAGCTCTTTCATCCTAATTTGACCCTTTTGATTGTAACTGAAGGGTCACAGGGCTGTAG ATACTACACAAAGGAGTTCAAGGGCAGAGTTCCTGGAATCAAGGTTAAACCCGTTGACACAACCGGTGCAGGCGATGCGTTTGTTGCTGGCCTCCTCAGC AGCCTGGCTTCCGACACAAGTATTCTCAAGAATGAGAAGAGGTTAAGAGAAGCCCTCTACTTCGCCAACGCCTGTGGAGCTGTGACGGTGACCGAGAGAG GTGCGATCCCGGCACTGCCCACAAAGGAAGCTGTCCTGAAACTCATGAAGCCGGTTGCTTCATGA
AA sequence Show only first row Show all	>Lus10031668 pacid=23180683 polypeptide=Lus10031668 locus=Lus10031668.g ID=Lus10031668.BGIv1.0 annot-version=v1.0 MAQNQAKGLLLPVSLAMFALSSLESDKDPGSKSLVVCFGEMLIDFVPTVNGVSLAEAPDFRKAPGGAPANVAVGISRLGGSSAFIGKLGDDEFGHMLDDI LKQNNVDNSGVRFDPHARTALAFVTLRADGEREFLFFRHPSADMLLKESELQIDILKKAIVFHCGSISLISDPCRSAQIAALKTVKTSGGILSYDPNLRL ALWPSPEAAKEGIMSIWNEADVIKISEDEIVFLTGGDDPNDDDVVLKKLFHPNLTLLIVTEGSQGCRYYTKEFKGRVPGIKVKPVDTTGAGDAFVAGLLS SLASDTSILKNEKRLREALYFANACGAVTVTERGAIPALPTKEAVLKLMKPVAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10031668 [exp]	0	1
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10025657 [exp]	2.2	0.8920
AT2G20760			Clathrin light chain protein (...		Lus10018480 [exp]	3.3	0.9113
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10016645 [exp]	3.7	0.9020
AT1G74030		ENO1	enolase 1 (.1)		Lus10027255 [exp]	3.9	0.9009
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10043103 [exp]	6.3	0.8998
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	7.9	0.8743
AT3G52470			Late embryogenesis abundant (L...		Lus10021286 [exp]	8.5	0.8687
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10035933 [exp]	9.8	0.8424
AT4G02040			unknown protein		Lus10019069 [exp]	9.9	0.8671
AT5G10840			Endomembrane protein 70 protei...		Lus10000222 [exp]	10.2	0.8609

Compare expression of checked genes

Lus10031668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.