Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51820 981 / 0 STF1, PGM1, ATPGMP, PGM STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) AT1G70730 669 / 0 PGM2 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) AT1G23190 668 / 0 PGM3 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027400 [exp] 1140 / 0 AT5G51820 966 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) Lus10001596 [exp] 692 / 0 AT1G23190 1024 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) Lus10003712 [exp] 687 / 0 AT1G23190 1017 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) Lus10034595 [exp] 679 / 0 AT1G70730 1017 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) Lus10021777 [exp] 679 / 0 AT1G70730 1026 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134700 [exp] 1026 / 0 AT5G51820 1033 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) Potri.012G132500 [exp] 1023 / 0 AT5G51820 1029 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) Potri.008G132500 [exp] 682 / 0 AT1G23190 987 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) Potri.010G109500 [exp] 677 / 0 AT1G70730 1006 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02878 [flax] [poplar] PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 [flax] [poplar] PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF00408 [flax] [poplar] PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain PF02880 [flax] [poplar] PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Representative CDS sequence Show only first row Show all	>Lus10031669 pacid=23180605 polypeptide=Lus10031669 locus=Lus10031669.g ID=Lus10031669.BGIv1.0 annot-version=v1.0 ATGATGACTGACGAGATAAAGCTAATTTTGGAAAAGAGCGAACATGTGGCTACTCATTCACGGTTCTTGATTTCCGCAGCTCATTGGAACTCCACCATTT TCGCCCTCACTCAACACTGTCCAGTAGCTCACTCACCGGGATCACCAAACCACCGAAACCTCCCGCCCGCCCGCCGTCGTCGTCATCGCGGCCGTGTTCG TTTACCTGATCAGTTCTCAATGGCGCCTTCTCTCTGTTGCTCCAGACTGGAGAATTTCGTCTTCTCTTCCGCGCTCTTCAGGCTTAAGAAGAACCAGCAG CAGCCTAGTGTTGCTAGAAATGGCAGCATCGCAGTGCTCTCCTCCGCTACTTCTAAGCTCCGCTCTCGCTCGTTCTCTGTCAGCGCTGTCTCTCCGCCGT CTTCTCCCGCTGCCGTCGCTGAACCGGAAGGGATCAAGATTAGCTCGGTGCCGACGAAGCCTATTGAAGGCCAGAAGACGGGAACCAGCGGTCTCCGTAA GAAGGTGAAAGTGTTCAAGGAAGAAAACTATCTTGCCAATTGGATTCAGGCATTGTTCAATTCATTGCCTCCGGAGGATTATAAGAATGGATTGCTAGTG TTAGGAGGCGATGGTCGTTACTTCAACAAAGAAGCTGCACAGATAATCATCAAAATTGCTGCTGGAAATGGTGTTGGCAAAATCCTTGTTGGCAAGGATG GCATCCTTTCTACACCGGCTGTCTCTGCTGTTATTAGGAAAAGAAAGGCCAACGGTGGATTCATAATGAGTGCGAGCCATAATCCTGGGGGCCCTGAGTA CGATTGGGGCATCAAGTTTAATTACAGCAGCGGGCAGCCTGCCCCTGAGTCAATCACGGACAAGATCTATGGGAATACTCTCTCTATCTCTGATATTAAG ACAGCTGATATTCCTGATATTAACCTGTCTCGTCTTGGAGTTACTAAATACGGGAGCTTCTCCATTGAAGTAGTAGATCCAGTTTCTGACTACCTGGAGC TAATGGAGAATGTATTTGATTTTGAACTTATCAGAAGTCTCGTTTCACGTCCTAATTTCAGGTTGGTATTCGACGCAATGCATGCTGTTACCGGTGCTTA TGCGAAGCCTATATTTGTGGACAAGCTAGGAGCTAGTATGGATTCAATTTTGAATGGAGTCCCTCTTGAAGATTTTGGGCATGGCCATCCAGATCCCAAT CTTACATATGCCATGGAACTGGTTTTGATTATGTTTGGTGGAAATGGACCCGATTTTGGAGCTGCTAGTGACGGAGACGGTGATCGCAACATGATCTTGG GCAAAGGATTTTTCGTAACTCCTTCGGATTCGGTTGCTTTTATTGCTGCTAATGCTCAAGAAGCCATCCCTTACTTCAAGAGTGGACCGAAGGGTTTAGC TCGGTCAATGCCAACCAGTGGTGCTCTTGACCGTGTCGCTGAAAAGCTAAATCTTCAATTTTTTGAGGTACCCACCGGTTGGAAATTTTTCGGCAACCTA ATGGATGCTGAGAAATTATCTATATGTGGAGAAGAAAGTTTCGGCACAGGATCAGATCATATTCGTGAGAAAGATGGCATATGGGCCGTGCTAGCTTGGC TTTCAATTATTGCCCACAAAAACAAAAACAAGAAACCAGGGGAGAAGCTAGTCTCAGTTGCTGATGTTGTTAAAGACCACTGGGCAACTTATGGAAGAAA CTTCTTCTCGAGATATGATTACGAGGCAAGACTCTACTCTGCATTCGACTTCCAGCAATCTGTTACTTGGGATGAATGTGAATCTGAAGGAGCCAACAAA ATGATTGAACATCTAAGAGGCTTGATCTCCGAGAGCAAACCGGGTGACCAATATGGAAGCTACACGCTGAAGTTTGCAGACGACTTCTCATACACCGATC CCGTTGATGGAAGTGTGGCGTCGAAACAAGGTGTCCGGTTCGTGTTCAGTGACGGGTCAAGGATCATCTTCCGCTTATCAGGAACCGGATCGGCAGGCGC AACAGTAAGAATCTACATCGAGCAGTTCGAACCAGATGTCTCGAAACACGACCTGGATGCACAAAATGCACTGAAGCCCCTCATAGATTTGGCACTCTCG GTCTCGAAGCTGAAGGACTTCACCGGAAGAGAAAAACCCACTGTCATCACATAA
AA sequence Show only first row Show all	>Lus10031669 pacid=23180605 polypeptide=Lus10031669 locus=Lus10031669.g ID=Lus10031669.BGIv1.0 annot-version=v1.0 MMTDEIKLILEKSEHVATHSRFLISAAHWNSTIFALTQHCPVAHSPGSPNHRNLPPARRRRHRGRVRLPDQFSMAPSLCCSRLENFVFSSALFRLKKNQQ QPSVARNGSIAVLSSATSKLRSRSFSVSAVSPPSSPAAVAEPEGIKISSVPTKPIEGQKTGTSGLRKKVKVFKEENYLANWIQALFNSLPPEDYKNGLLV LGGDGRYFNKEAAQIIIKIAAGNGVGKILVGKDGILSTPAVSAVIRKRKANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISDIK TADIPDINLSRLGVTKYGSFSIEVVDPVSDYLELMENVFDFELIRSLVSRPNFRLVFDAMHAVTGAYAKPIFVDKLGASMDSILNGVPLEDFGHGHPDPN LTYAMELVLIMFGGNGPDFGAASDGDGDRNMILGKGFFVTPSDSVAFIAANAQEAIPYFKSGPKGLARSMPTSGALDRVAEKLNLQFFEVPTGWKFFGNL MDAEKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAHKNKNKKPGEKLVSVADVVKDHWATYGRNFFSRYDYEARLYSAFDFQQSVTWDECESEGANK MIEHLRGLISESKPGDQYGSYTLKFADDFSYTDPVDGSVASKQGVRFVFSDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHDLDAQNALKPLIDLALS VSKLKDFTGREKPTVIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	0	1
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Lus10035067 [exp]	2.0	0.8586
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	2.2	0.8769
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10011282 [exp]	4.6	0.8620
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001921 [exp]	4.9	0.8634
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10029398 [exp]	5.1	0.8331
AT2G33255			Haloacid dehalogenase-like hyd...		Lus10004405 [exp]	6.0	0.8369
AT4G14147		ARPC4	protein binding (.1.2)		Lus10027499 [exp]	6.5	0.8144
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	6.9	0.8462
AT4G33480			unknown protein		Lus10002086 [exp]	9.4	0.7486
AT5G23130			Peptidoglycan-binding LysM dom...		Lus10013432 [exp]	10.2	0.8057

Compare expression of checked genes

Lus10031669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.